Hb_000103_420

Information

Type -
Description -
Location Contig103: 361350-364391
Sequence    

Annotation

kegg
ID rcu:RCOM_0910800
description cation-transporting atpase plant, putative (EC:3.6.3.8)
nr
ID XP_011027295.1
description PREDICTED: putative calcium-transporting ATPase 13, plasma membrane-type [Populus euphratica]
swissprot
ID Q9LIK7
description Putative calcium-transporting ATPase 13, plasma membrane-type OS=Arabidopsis thaliana GN=ACA13 PE=3 SV=1
trembl
ID B9RTI7
description Calcium-transporting ATPase OS=Ricinus communis GN=RCOM_0910800 PE=3 SV=1
Gene Ontology
ID GO:0016021
description calcium-transporting atpase plasma membrane-type

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000103_420 0.0 - - PREDICTED: putative calcium-transporting ATPase 13, plasma membrane-type [Populus euphratica]
2 Hb_001133_010 0.1320219191 - - conserved hypothetical protein [Ricinus communis]
3 Hb_002875_070 0.1404302325 - - PREDICTED: probable mitochondrial chaperone BCS1-A [Jatropha curcas]
4 Hb_000836_600 0.1406136911 - - PREDICTED: delta(8)-fatty-acid desaturase 2 [Jatropha curcas]
5 Hb_000336_190 0.1447067872 - - PREDICTED: UPF0481 protein At3g47200-like [Gossypium raimondii]
6 Hb_143766_030 0.1598971674 - - protein with unknown function [Ricinus communis]
7 Hb_006054_030 0.1602093266 - - PREDICTED: protein GPR107-like [Jatropha curcas]
8 Hb_001437_010 0.1618847042 - - PREDICTED: probable receptor-like protein kinase At1g33260 [Jatropha curcas]
9 Hb_000087_100 0.1644354427 - - PREDICTED: cellulose synthase-like protein D3 [Jatropha curcas]
10 Hb_002759_260 0.1662247256 - - PREDICTED: probable galacturonosyltransferase-like 9 [Jatropha curcas]
11 Hb_000836_210 0.1737323266 - - hypothetical protein JCGZ_14362 [Jatropha curcas]
12 Hb_000027_180 0.177116742 - - PREDICTED: uncharacterized protein LOC105642058 [Jatropha curcas]
13 Hb_004724_330 0.1773014121 - - Capsanthin/capsorubin synthase, chloroplast precursor, putative [Ricinus communis]
14 Hb_138585_100 0.1795305033 - - PREDICTED: uncharacterized protein LOC105648740 [Jatropha curcas]
15 Hb_008248_020 0.1807502724 transcription factor TF Family: DBB zinc finger protein, putative [Ricinus communis]
16 Hb_000117_060 0.1811127038 - - PREDICTED: uncharacterized protein LOC103949199 [Pyrus x bretschneideri]
17 Hb_004013_020 0.1814432225 - - PREDICTED: F-box protein SKIP2 [Jatropha curcas]
18 Hb_000009_200 0.182398765 - - PREDICTED: UPF0496 protein At2g18630 [Jatropha curcas]
19 Hb_000069_780 0.1833619037 - - atpob1, putative [Ricinus communis]
20 Hb_012787_040 0.1837817015 - - PREDICTED: uncharacterized protein LOC105649794 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_000103_420 Hb_000103_420 Hb_001133_010 Hb_001133_010 Hb_000103_420--Hb_001133_010 Hb_002875_070 Hb_002875_070 Hb_000103_420--Hb_002875_070 Hb_000836_600 Hb_000836_600 Hb_000103_420--Hb_000836_600 Hb_000336_190 Hb_000336_190 Hb_000103_420--Hb_000336_190 Hb_143766_030 Hb_143766_030 Hb_000103_420--Hb_143766_030 Hb_006054_030 Hb_006054_030 Hb_000103_420--Hb_006054_030 Hb_001133_010--Hb_000836_600 Hb_001133_010--Hb_006054_030 Hb_000200_170 Hb_000200_170 Hb_001133_010--Hb_000200_170 Hb_001133_010--Hb_143766_030 Hb_001133_010--Hb_002875_070 Hb_000069_780 Hb_000069_780 Hb_001133_010--Hb_000069_780 Hb_005714_100 Hb_005714_100 Hb_002875_070--Hb_005714_100 Hb_000035_050 Hb_000035_050 Hb_002875_070--Hb_000035_050 Hb_002759_260 Hb_002759_260 Hb_002875_070--Hb_002759_260 Hb_003849_190 Hb_003849_190 Hb_002875_070--Hb_003849_190 Hb_000009_200 Hb_000009_200 Hb_002875_070--Hb_000009_200 Hb_004013_020 Hb_004013_020 Hb_000836_600--Hb_004013_020 Hb_000836_600--Hb_000200_170 Hb_000836_600--Hb_143766_030 Hb_002876_250 Hb_002876_250 Hb_000836_600--Hb_002876_250 Hb_002849_070 Hb_002849_070 Hb_000836_600--Hb_002849_070 Hb_178658_010 Hb_178658_010 Hb_000336_190--Hb_178658_010 Hb_000836_210 Hb_000836_210 Hb_000336_190--Hb_000836_210 Hb_000003_760 Hb_000003_760 Hb_000336_190--Hb_000003_760 Hb_000336_190--Hb_002875_070 Hb_002849_110 Hb_002849_110 Hb_000336_190--Hb_002849_110 Hb_001472_140 Hb_001472_140 Hb_000336_190--Hb_001472_140 Hb_002248_120 Hb_002248_120 Hb_143766_030--Hb_002248_120 Hb_003605_220 Hb_003605_220 Hb_143766_030--Hb_003605_220 Hb_143766_030--Hb_000200_170 Hb_000735_140 Hb_000735_140 Hb_143766_030--Hb_000735_140 Hb_023344_110 Hb_023344_110 Hb_143766_030--Hb_023344_110 Hb_143766_030--Hb_000069_780 Hb_000941_080 Hb_000941_080 Hb_006054_030--Hb_000941_080 Hb_001369_780 Hb_001369_780 Hb_006054_030--Hb_001369_780 Hb_006054_030--Hb_000069_780 Hb_001410_130 Hb_001410_130 Hb_006054_030--Hb_001410_130 Hb_000270_230 Hb_000270_230 Hb_006054_030--Hb_000270_230 Hb_000460_060 Hb_000460_060 Hb_006054_030--Hb_000460_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.141431 1.74607 0.44303 1.16583 0.291379 0.0949885
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.18593 0.0787842 0.301483 0.102664 0.408327

CAGE analysis