Hb_000103_440

Information

Type -
Description -
Location Contig103: 386093-388114
Sequence    

Annotation

kegg
ID pop:POPTR_0008s15900g
description POPTRDRAFT_564896; hypothetical protein
nr
ID XP_002311648.2
description hypothetical protein POPTR_0008s15900g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID B9HKB9
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0008s15900g PE=4 SV=2
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000103_440 0.0 - - hypothetical protein POPTR_0008s15900g [Populus trichocarpa]
2 Hb_003058_240 0.0650410354 - - PREDICTED: tubulin beta-5 chain-like [Jatropha curcas]
3 Hb_001140_290 0.0675853203 - - hypothetical protein JCGZ_26107 [Jatropha curcas]
4 Hb_002151_070 0.0676035217 - - PREDICTED: inactive protein RESTRICTED TEV MOVEMENT 2-like [Jatropha curcas]
5 Hb_002809_180 0.0727132072 - - PREDICTED: homeobox protein HD1 [Jatropha curcas]
6 Hb_005711_030 0.0743959955 - - hypothetical protein RCOM_0460020 [Ricinus communis]
7 Hb_003152_020 0.0798179255 - - PREDICTED: neutral alpha-glucosidase C [Jatropha curcas]
8 Hb_001289_070 0.0811203883 - - PREDICTED: protein YLS9-like [Jatropha curcas]
9 Hb_001688_050 0.0814783783 - - PREDICTED: reticulon-like protein B9 [Jatropha curcas]
10 Hb_061256_020 0.0847876987 - - PREDICTED: UPF0392 protein RCOM_0530710 [Jatropha curcas]
11 Hb_136408_040 0.0861714652 - - PREDICTED: protein NDR1 [Jatropha curcas]
12 Hb_004650_110 0.0869375684 - - hypothetical protein POPTR_0002s08760g [Populus trichocarpa]
13 Hb_015807_130 0.0878918401 - - PREDICTED: kinesin-3 isoform X1 [Jatropha curcas]
14 Hb_000813_070 0.0904687402 - - conserved hypothetical protein [Ricinus communis]
15 Hb_005000_150 0.0911583445 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000017_180 0.0916288994 - - hypothetical protein JCGZ_20551 [Jatropha curcas]
17 Hb_007163_110 0.0925132069 - - PREDICTED: kinesin-like protein KIF19 [Jatropha curcas]
18 Hb_000402_060 0.0946183204 - - PREDICTED: uncharacterized protein LOC105644642 isoform X2 [Jatropha curcas]
19 Hb_010172_040 0.0955959684 - - PREDICTED: BAG family molecular chaperone regulator 3-like isoform X1 [Jatropha curcas]
20 Hb_009252_070 0.0968654954 - - hypothetical protein JCGZ_11488 [Jatropha curcas]

Gene co-expression network

sample Hb_000103_440 Hb_000103_440 Hb_003058_240 Hb_003058_240 Hb_000103_440--Hb_003058_240 Hb_001140_290 Hb_001140_290 Hb_000103_440--Hb_001140_290 Hb_002151_070 Hb_002151_070 Hb_000103_440--Hb_002151_070 Hb_002809_180 Hb_002809_180 Hb_000103_440--Hb_002809_180 Hb_005711_030 Hb_005711_030 Hb_000103_440--Hb_005711_030 Hb_003152_020 Hb_003152_020 Hb_000103_440--Hb_003152_020 Hb_000402_060 Hb_000402_060 Hb_003058_240--Hb_000402_060 Hb_003058_240--Hb_001140_290 Hb_003058_240--Hb_002151_070 Hb_009476_080 Hb_009476_080 Hb_003058_240--Hb_009476_080 Hb_003058_240--Hb_002809_180 Hb_001140_290--Hb_002151_070 Hb_005000_150 Hb_005000_150 Hb_001140_290--Hb_005000_150 Hb_138977_010 Hb_138977_010 Hb_001140_290--Hb_138977_010 Hb_001140_290--Hb_002809_180 Hb_010589_010 Hb_010589_010 Hb_001140_290--Hb_010589_010 Hb_002151_070--Hb_005000_150 Hb_000813_070 Hb_000813_070 Hb_002151_070--Hb_000813_070 Hb_002151_070--Hb_005711_030 Hb_001289_070 Hb_001289_070 Hb_002151_070--Hb_001289_070 Hb_010172_040 Hb_010172_040 Hb_002809_180--Hb_010172_040 Hb_001397_020 Hb_001397_020 Hb_002809_180--Hb_001397_020 Hb_003549_100 Hb_003549_100 Hb_002809_180--Hb_003549_100 Hb_002809_180--Hb_010589_010 Hb_002809_180--Hb_003152_020 Hb_005711_030--Hb_000813_070 Hb_005711_030--Hb_001289_070 Hb_133974_010 Hb_133974_010 Hb_005711_030--Hb_133974_010 Hb_004650_120 Hb_004650_120 Hb_005711_030--Hb_004650_120 Hb_000017_180 Hb_000017_180 Hb_005711_030--Hb_000017_180 Hb_003152_020--Hb_001397_020 Hb_007163_110 Hb_007163_110 Hb_003152_020--Hb_007163_110 Hb_136408_040 Hb_136408_040 Hb_003152_020--Hb_136408_040 Hb_003152_020--Hb_010589_010 Hb_003152_020--Hb_005000_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.169227 0.926357 4.26159 0.0374376 0.0218327
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.151221 3.37172

CAGE analysis