Hb_000103_550

Information

Type -
Description -
Location Contig103: 457660-460155
Sequence    

Annotation

kegg
ID rcu:RCOM_0910700
description hypothetical protein
nr
ID XP_012069733.1
description PREDICTED: guanine nucleotide-binding protein subunit gamma 2 isoform X1 [Jatropha curcas]
swissprot
ID Q93V47
description Guanine nucleotide-binding protein subunit gamma 2 OS=Arabidopsis thaliana GN=GG2 PE=1 SV=1
trembl
ID B9RTH7
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0910700 PE=4 SV=1
Gene Ontology
ID GO:0005834
description guanine nucleotide-binding protein subunit gamma 2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000103_550 0.0 - - PREDICTED: guanine nucleotide-binding protein subunit gamma 2 isoform X1 [Jatropha curcas]
2 Hb_000270_620 0.1070424381 - - PREDICTED: succinate dehydrogenase subunit 7B, mitochondrial-like isoform X1 [Jatropha curcas]
3 Hb_000318_490 0.1206518796 - - PREDICTED: mitochondrial import receptor subunit TOM6 homolog [Jatropha curcas]
4 Hb_001159_200 0.1287247428 - - PREDICTED: clp protease-related protein At4g12060, chloroplastic-like [Jatropha curcas]
5 Hb_003095_070 0.1322282294 - - hypothetical protein POPTR_0009s11230g [Populus trichocarpa]
6 Hb_006351_110 0.1322414551 - - -
7 Hb_001396_090 0.1337336274 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 75 [Jatropha curcas]
8 Hb_000592_060 0.1373234565 - - PREDICTED: ras-related protein RABA6a [Populus euphratica]
9 Hb_000431_160 0.1376641017 - - PREDICTED: protein transport protein Sec61 subunit gamma-like [Jatropha curcas]
10 Hb_004545_130 0.1398455356 - - uncharacterized protein LOC100305465 [Glycine max]
11 Hb_000123_160 0.141153449 - - PREDICTED: 40S ribosomal protein S15a-1 [Jatropha curcas]
12 Hb_001863_420 0.1420744553 - - PREDICTED: probable protein phosphatase 2C 10, partial [Vitis vinifera]
13 Hb_000819_070 0.1436281342 - - PREDICTED: dolichol-phosphate mannosyltransferase subunit 1 [Jatropha curcas]
14 Hb_001102_250 0.1456971076 - - PREDICTED: E3 ubiquitin-protein ligase CCNB1IP1 homolog isoform X1 [Jatropha curcas]
15 Hb_003913_050 0.1460439774 - - 60S ribosomal protein L27B [Hevea brasiliensis]
16 Hb_000617_110 0.1461129777 - - translationally controlled tumor protein [Hevea brasiliensis]
17 Hb_004159_050 0.1493606912 - - conserved hypothetical protein [Ricinus communis]
18 Hb_001369_400 0.1515554012 - - PREDICTED: uncharacterized protein LOC105648609 [Jatropha curcas]
19 Hb_001776_170 0.1535823029 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000920_320 0.1542007133 transcription factor TF Family: Orphans hypothetical protein JCGZ_24525 [Jatropha curcas]

Gene co-expression network

sample Hb_000103_550 Hb_000103_550 Hb_000270_620 Hb_000270_620 Hb_000103_550--Hb_000270_620 Hb_000318_490 Hb_000318_490 Hb_000103_550--Hb_000318_490 Hb_001159_200 Hb_001159_200 Hb_000103_550--Hb_001159_200 Hb_003095_070 Hb_003095_070 Hb_000103_550--Hb_003095_070 Hb_006351_110 Hb_006351_110 Hb_000103_550--Hb_006351_110 Hb_001396_090 Hb_001396_090 Hb_000103_550--Hb_001396_090 Hb_000123_160 Hb_000123_160 Hb_000270_620--Hb_000123_160 Hb_000270_620--Hb_000318_490 Hb_004159_050 Hb_004159_050 Hb_000270_620--Hb_004159_050 Hb_000920_320 Hb_000920_320 Hb_000270_620--Hb_000920_320 Hb_004545_130 Hb_004545_130 Hb_000270_620--Hb_004545_130 Hb_000318_490--Hb_000123_160 Hb_001369_400 Hb_001369_400 Hb_000318_490--Hb_001369_400 Hb_030565_040 Hb_030565_040 Hb_000318_490--Hb_030565_040 Hb_000976_250 Hb_000976_250 Hb_000318_490--Hb_000976_250 Hb_004333_030 Hb_004333_030 Hb_000318_490--Hb_004333_030 Hb_001377_380 Hb_001377_380 Hb_000318_490--Hb_001377_380 Hb_001159_200--Hb_001369_400 Hb_000281_230 Hb_000281_230 Hb_001159_200--Hb_000281_230 Hb_002876_370 Hb_002876_370 Hb_001159_200--Hb_002876_370 Hb_000788_080 Hb_000788_080 Hb_001159_200--Hb_000788_080 Hb_001159_200--Hb_000318_490 Hb_001863_420 Hb_001863_420 Hb_001159_200--Hb_001863_420 Hb_001102_250 Hb_001102_250 Hb_003095_070--Hb_001102_250 Hb_001276_060 Hb_001276_060 Hb_003095_070--Hb_001276_060 Hb_003095_070--Hb_000788_080 Hb_005908_040 Hb_005908_040 Hb_003095_070--Hb_005908_040 Hb_011671_400 Hb_011671_400 Hb_003095_070--Hb_011671_400 Hb_072912_020 Hb_072912_020 Hb_003095_070--Hb_072912_020 Hb_010172_100 Hb_010172_100 Hb_006351_110--Hb_010172_100 Hb_006351_110--Hb_004159_050 Hb_006351_110--Hb_001102_250 Hb_000316_100 Hb_000316_100 Hb_006351_110--Hb_000316_100 Hb_010594_030 Hb_010594_030 Hb_006351_110--Hb_010594_030 Hb_001396_090--Hb_000920_320 Hb_003913_050 Hb_003913_050 Hb_001396_090--Hb_003913_050 Hb_001396_090--Hb_000270_620 Hb_061383_010 Hb_061383_010 Hb_001396_090--Hb_061383_010 Hb_001776_170 Hb_001776_170 Hb_001396_090--Hb_001776_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.4392 0.636196 1.51767 3.30106 6.41306 7.56543
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
43.8162 109.651 48.8513 13.359 2.40124

CAGE analysis