Hb_000103_560

Information

Type -
Description -
Location Contig103: 460210-464111
Sequence    

Annotation

kegg
ID rcu:RCOM_0910690
description ADP-ribosylation factor, putative
nr
ID XP_002517045.1
description ADP-ribosylation factor, putative [Ricinus communis]
swissprot
ID Q55AD9
description ADP-ribosylation factor-like protein 5 OS=Dictyostelium discoideum GN=arl5 PE=3 SV=1
trembl
ID B9RTH6
description ADP-ribosylation factor, putative OS=Ricinus communis GN=RCOM_0910690 PE=3 SV=1
Gene Ontology
ID GO:0005622
description adp-ribosylation factor-like protein 5

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01247: 460281-464046
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000103_560 0.0 - - ADP-ribosylation factor, putative [Ricinus communis]
2 Hb_063716_050 0.0469154982 - - PREDICTED: uncharacterized protein LOC105634866 [Jatropha curcas]
3 Hb_000832_140 0.0571228559 - - actin depolymerizing factor 4 [Hevea brasiliensis]
4 Hb_001604_080 0.0572255112 - - PREDICTED: uncharacterized protein LOC105638437 [Jatropha curcas]
5 Hb_000815_040 0.0575624745 transcription factor TF Family: M-type hypothetical protein JCGZ_15623 [Jatropha curcas]
6 Hb_002078_150 0.0596006053 - - protein with unknown function [Ricinus communis]
7 Hb_000529_190 0.0600406139 - - PREDICTED: magnesium-dependent phosphatase 1-like [Jatropha curcas]
8 Hb_002890_140 0.0612044815 - - PREDICTED: uncharacterized protein LOC100263805 [Vitis vinifera]
9 Hb_011689_080 0.0655623976 - - PREDICTED: uncharacterized protein LOC105631867 [Jatropha curcas]
10 Hb_003058_130 0.0663571964 - - PREDICTED: protein N-lysine methyltransferase METTL21A isoform X1 [Jatropha curcas]
11 Hb_009773_020 0.066857407 - - PREDICTED: molybdopterin synthase sulfur carrier subunit [Jatropha curcas]
12 Hb_000398_180 0.0676444837 - - hypothetical protein PRUPE_ppa009665mg [Prunus persica]
13 Hb_004545_060 0.0693180953 - - PREDICTED: trafficking protein particle complex subunit 6B [Jatropha curcas]
14 Hb_000329_030 0.0694064806 - - PREDICTED: uncharacterized protein LOC105643133 isoform X1 [Jatropha curcas]
15 Hb_003050_080 0.0698567536 - - 40S ribosomal protein S14, putative [Ricinus communis]
16 Hb_000926_250 0.069904066 - - hypothetical protein POPTR_0011s08930g [Populus trichocarpa]
17 Hb_096563_010 0.0708232375 - - PREDICTED: cytoplasmic tRNA 2-thiolation protein 1 [Prunus mume]
18 Hb_010180_020 0.0710634827 - - hypothetical protein glysoja_030394 [Glycine soja]
19 Hb_000494_020 0.0714042476 - - PREDICTED: actin-related protein 2/3 complex subunit 5A [Jatropha curcas]
20 Hb_009557_070 0.0720485908 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000103_560 Hb_000103_560 Hb_063716_050 Hb_063716_050 Hb_000103_560--Hb_063716_050 Hb_000832_140 Hb_000832_140 Hb_000103_560--Hb_000832_140 Hb_001604_080 Hb_001604_080 Hb_000103_560--Hb_001604_080 Hb_000815_040 Hb_000815_040 Hb_000103_560--Hb_000815_040 Hb_002078_150 Hb_002078_150 Hb_000103_560--Hb_002078_150 Hb_000529_190 Hb_000529_190 Hb_000103_560--Hb_000529_190 Hb_001489_060 Hb_001489_060 Hb_063716_050--Hb_001489_060 Hb_003050_080 Hb_003050_080 Hb_063716_050--Hb_003050_080 Hb_063716_050--Hb_000529_190 Hb_063716_050--Hb_000832_140 Hb_063716_050--Hb_001604_080 Hb_000174_090 Hb_000174_090 Hb_000832_140--Hb_000174_090 Hb_002214_040 Hb_002214_040 Hb_000832_140--Hb_002214_040 Hb_000832_140--Hb_003050_080 Hb_000832_140--Hb_000529_190 Hb_010180_020 Hb_010180_020 Hb_001604_080--Hb_010180_020 Hb_001604_080--Hb_000815_040 Hb_000926_250 Hb_000926_250 Hb_001604_080--Hb_000926_250 Hb_001604_080--Hb_000529_190 Hb_002890_140 Hb_002890_140 Hb_000815_040--Hb_002890_140 Hb_000815_040--Hb_002214_040 Hb_000815_040--Hb_000529_190 Hb_118707_030 Hb_118707_030 Hb_000815_040--Hb_118707_030 Hb_004128_190 Hb_004128_190 Hb_002078_150--Hb_004128_190 Hb_000398_180 Hb_000398_180 Hb_002078_150--Hb_000398_180 Hb_003847_080 Hb_003847_080 Hb_002078_150--Hb_003847_080 Hb_001377_290 Hb_001377_290 Hb_002078_150--Hb_001377_290 Hb_004545_060 Hb_004545_060 Hb_002078_150--Hb_004545_060 Hb_000529_190--Hb_002214_040 Hb_001789_070 Hb_001789_070 Hb_000529_190--Hb_001789_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
40.2498 13.307 15.5733 23.4003 31.5262 41.0987
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
39.7119 52.9718 33.0555 18.13 11.772

CAGE analysis