Hb_000104_070

Information

Type -
Description -
Location Contig104: 187601-188394
Sequence    

Annotation

kegg
ID rcu:RCOM_0009470
description Citrate-binding protein precursor, putative
nr
ID XP_012075298.1
description PREDICTED: citrate-binding protein-like [Jatropha curcas]
swissprot
ID Q39962
description Citrate-binding protein OS=Hevea brasiliensis GN=CBP PE=1 SV=1
trembl
ID A0A067KSR0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09464 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01450: 187632-188534
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000104_070 0.0 - - PREDICTED: citrate-binding protein-like [Jatropha curcas]
2 Hb_002217_410 0.0740972175 - - hypothetical protein L484_027883 [Morus notabilis]
3 Hb_005016_180 0.1278719183 - - phosphoglycerate kinase, putative [Ricinus communis]
4 Hb_001862_080 0.2434151908 - - hypothetical protein RCOM_1154950 [Ricinus communis]
5 Hb_004994_360 0.2625482884 - - PREDICTED: putative ripening-related protein 1 [Populus euphratica]
6 Hb_045985_010 0.2667672865 - - hypothetical protein JCGZ_00291 [Jatropha curcas]
7 Hb_000230_310 0.2740300145 - - transferase, transferring glycosyl groups, putative [Ricinus communis]
8 Hb_187739_010 0.2741298231 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
9 Hb_000896_130 0.2749242058 transcription factor TF Family: CPP cysteine-rich polycomb-like family protein [Populus trichocarpa]
10 Hb_135569_010 0.2779921616 - - PREDICTED: uncharacterized protein LOC105108579 [Populus euphratica]
11 Hb_034589_010 0.2805473396 - - hypothetical protein MIMGU_mgv1a020753mg, partial [Erythranthe guttata]
12 Hb_115116_010 0.2811248056 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1 [Jatropha curcas]
13 Hb_001246_040 0.2946095632 - - hypothetical protein JCGZ_14673 [Jatropha curcas]
14 Hb_170516_010 0.3046257766 - - hypothetical protein MTR_001s0023 [Medicago truncatula]
15 Hb_071116_010 0.3051161872 - - PREDICTED: uncharacterized protein LOC105775124 [Gossypium raimondii]
16 Hb_001318_160 0.3060630525 - - Polygalacturonase precursor, putative [Ricinus communis]
17 Hb_133605_010 0.3068288847 - - NBS-LRR resistance protein RGH1 [Manihot esculenta]
18 Hb_031403_030 0.3080052266 - - -
19 Hb_000988_010 0.3100341471 - - hypothetical protein POPTR_0004s17730g [Populus trichocarpa]
20 Hb_032202_130 0.3118092192 - - PREDICTED: uncharacterized protein LOC105643062 [Jatropha curcas]

Gene co-expression network

sample Hb_000104_070 Hb_000104_070 Hb_002217_410 Hb_002217_410 Hb_000104_070--Hb_002217_410 Hb_005016_180 Hb_005016_180 Hb_000104_070--Hb_005016_180 Hb_001862_080 Hb_001862_080 Hb_000104_070--Hb_001862_080 Hb_004994_360 Hb_004994_360 Hb_000104_070--Hb_004994_360 Hb_045985_010 Hb_045985_010 Hb_000104_070--Hb_045985_010 Hb_000230_310 Hb_000230_310 Hb_000104_070--Hb_000230_310 Hb_002217_410--Hb_005016_180 Hb_002217_410--Hb_001862_080 Hb_135569_010 Hb_135569_010 Hb_002217_410--Hb_135569_010 Hb_002217_410--Hb_045985_010 Hb_002217_410--Hb_000230_310 Hb_000896_130 Hb_000896_130 Hb_005016_180--Hb_000896_130 Hb_005016_180--Hb_004994_360 Hb_003762_010 Hb_003762_010 Hb_005016_180--Hb_003762_010 Hb_011161_030 Hb_011161_030 Hb_005016_180--Hb_011161_030 Hb_001862_080--Hb_045985_010 Hb_000988_010 Hb_000988_010 Hb_001862_080--Hb_000988_010 Hb_002805_100 Hb_002805_100 Hb_001862_080--Hb_002805_100 Hb_006615_110 Hb_006615_110 Hb_001862_080--Hb_006615_110 Hb_002675_210 Hb_002675_210 Hb_001862_080--Hb_002675_210 Hb_008959_040 Hb_008959_040 Hb_004994_360--Hb_008959_040 Hb_032202_130 Hb_032202_130 Hb_004994_360--Hb_032202_130 Hb_001329_190 Hb_001329_190 Hb_004994_360--Hb_001329_190 Hb_005211_150 Hb_005211_150 Hb_004994_360--Hb_005211_150 Hb_045985_010--Hb_000988_010 Hb_045985_010--Hb_006615_110 Hb_187739_010 Hb_187739_010 Hb_045985_010--Hb_187739_010 Hb_045985_010--Hb_002805_100 Hb_045985_010--Hb_002675_210 Hb_034589_010 Hb_034589_010 Hb_000230_310--Hb_034589_010 Hb_002740_070 Hb_002740_070 Hb_000230_310--Hb_002740_070 Hb_071116_010 Hb_071116_010 Hb_000230_310--Hb_071116_010 Hb_000553_070 Hb_000553_070 Hb_000230_310--Hb_000553_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0285372 0.108752 0.0629794 0.0636502 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis