Hb_000105_020

Information

Type -
Description -
Location Contig105: 7068-8554
Sequence    

Annotation

kegg
ID mdm:103436333
description serine/threonine-protein kinase TOR-like
nr
ID XP_008372979.1
description PREDICTED: serine/threonine-protein kinase TOR-like [Malus domestica]
swissprot
ID -
description -
trembl
ID A0A068TPM1
description Coffea canephora DH200=94 genomic scaffold, scaffold_1 OS=Coffea canephora GN=GSCOC_T00014622001 PE=4 SV=1
Gene Ontology
ID GO:0000975
description target of rapamycin isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01684: 5722-6107 , PASA_asmbl_01685: 7020-22941
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000105_020 0.0 - - PREDICTED: serine/threonine-protein kinase TOR-like [Malus domestica]
2 Hb_008948_160 0.1150622945 - - PREDICTED: uncharacterized protein LOC104214688 isoform X2 [Nicotiana sylvestris]
3 Hb_143986_010 0.1226916602 - - PREDICTED: beta-galactosidase [Jatropha curcas]
4 Hb_000105_030 0.1289573587 - - fkbp-rapamycin associated protein, putative [Ricinus communis]
5 Hb_000162_020 0.1324427421 - - protein translocase, putative [Ricinus communis]
6 Hb_003604_040 0.1330464181 - - Serine/threonine-protein kinase sepA [Morus notabilis]
7 Hb_000046_180 0.1415725505 - - PREDICTED: uncharacterized protein LOC105631840 [Jatropha curcas]
8 Hb_120470_010 0.1453197899 - - PREDICTED: PAX3- and PAX7-binding protein 1 [Jatropha curcas]
9 Hb_011609_150 0.1478814788 - - PREDICTED: HEAT repeat-containing protein 5B [Jatropha curcas]
10 Hb_004254_110 0.1489087315 - - -
11 Hb_003211_040 0.1490928764 - - PREDICTED: uncharacterized protein LOC105634664 isoform X1 [Jatropha curcas]
12 Hb_011791_020 0.1494975841 - - hypothetical protein Csa_6G486930 [Cucumis sativus]
13 Hb_011947_050 0.1528697852 - - E3 ubiquitin protein ligase upl2, putative [Ricinus communis]
14 Hb_174865_020 0.1555368338 - - E3 ubiquitin protein ligase upl2, putative [Ricinus communis]
15 Hb_003604_030 0.1568142104 - - hypothetical protein MIMGU_mgv1a025764mg, partial [Erythranthe guttata]
16 Hb_001401_060 0.1568257064 - - PREDICTED: protein WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT 1-like [Jatropha curcas]
17 Hb_000061_510 0.1597736745 - - hypothetical protein JCGZ_11686 [Jatropha curcas]
18 Hb_000949_010 0.1602179695 - - PREDICTED: regulator of nonsense transcripts UPF2 [Jatropha curcas]
19 Hb_000327_080 0.1609021842 - - PREDICTED: regulator of nonsense transcripts UPF2 [Jatropha curcas]
20 Hb_006663_040 0.1624848231 - - PREDICTED: DDB1- and CUL4-associated factor homolog 1 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_000105_020 Hb_000105_020 Hb_008948_160 Hb_008948_160 Hb_000105_020--Hb_008948_160 Hb_143986_010 Hb_143986_010 Hb_000105_020--Hb_143986_010 Hb_000105_030 Hb_000105_030 Hb_000105_020--Hb_000105_030 Hb_000162_020 Hb_000162_020 Hb_000105_020--Hb_000162_020 Hb_003604_040 Hb_003604_040 Hb_000105_020--Hb_003604_040 Hb_000046_180 Hb_000046_180 Hb_000105_020--Hb_000046_180 Hb_120470_010 Hb_120470_010 Hb_008948_160--Hb_120470_010 Hb_008948_160--Hb_000105_030 Hb_008948_160--Hb_143986_010 Hb_011791_020 Hb_011791_020 Hb_008948_160--Hb_011791_020 Hb_008948_160--Hb_003604_040 Hb_143986_010--Hb_011791_020 Hb_143986_010--Hb_120470_010 Hb_000327_080 Hb_000327_080 Hb_143986_010--Hb_000327_080 Hb_000117_070 Hb_000117_070 Hb_143986_010--Hb_000117_070 Hb_000631_110 Hb_000631_110 Hb_000105_030--Hb_000631_110 Hb_014497_020 Hb_014497_020 Hb_000105_030--Hb_014497_020 Hb_011609_150 Hb_011609_150 Hb_000105_030--Hb_011609_150 Hb_003211_040 Hb_003211_040 Hb_000105_030--Hb_003211_040 Hb_000175_120 Hb_000175_120 Hb_000105_030--Hb_000175_120 Hb_002762_130 Hb_002762_130 Hb_000162_020--Hb_002762_130 Hb_003106_030 Hb_003106_030 Hb_000162_020--Hb_003106_030 Hb_003994_100 Hb_003994_100 Hb_000162_020--Hb_003994_100 Hb_000061_510 Hb_000061_510 Hb_000162_020--Hb_000061_510 Hb_000406_020 Hb_000406_020 Hb_000162_020--Hb_000406_020 Hb_005214_150 Hb_005214_150 Hb_000162_020--Hb_005214_150 Hb_000574_510 Hb_000574_510 Hb_003604_040--Hb_000574_510 Hb_000949_010 Hb_000949_010 Hb_003604_040--Hb_000949_010 Hb_003604_030 Hb_003604_030 Hb_003604_040--Hb_003604_030 Hb_003604_040--Hb_000117_070 Hb_011671_230 Hb_011671_230 Hb_003604_040--Hb_011671_230 Hb_003604_040--Hb_000046_180 Hb_003284_030 Hb_003284_030 Hb_000046_180--Hb_003284_030 Hb_000046_180--Hb_000949_010 Hb_001401_060 Hb_001401_060 Hb_000046_180--Hb_001401_060 Hb_174865_020 Hb_174865_020 Hb_000046_180--Hb_174865_020 Hb_011947_050 Hb_011947_050 Hb_000046_180--Hb_011947_050 Hb_002044_170 Hb_002044_170 Hb_000046_180--Hb_002044_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.087 17.2943 2.46152 2.96817 14.2139 8.17953
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.07092 0.541252 3.44927 10.0151 9.32262

CAGE analysis