Hb_000105_110

Information

Type -
Description -
Location Contig105: 150980-152376
Sequence    

Annotation

kegg
ID -
description -
nr
ID WP_026307478.1
description hypothetical protein, partial [Fervidibacteria bacterium SCGC AAA471-D06]
swissprot
ID -
description -
trembl
ID W1UIJ1
description Pyruvate kinase OS=Streptococcus sp. DORA_10 GN=Q617_SPSC00384G0004 PE=4 SV=1
Gene Ontology
ID GO:0000287
description pyruvate kinase isozyme chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000105_110 0.0 - - hypothetical protein, partial [Fervidibacteria bacterium SCGC AAA471-D06]
2 Hb_002343_030 0.1477162617 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000723_070 0.1926534613 - - PREDICTED: thylakoid lumenal 15.0 kDa protein 2, chloroplastic isoform X1 [Jatropha curcas]
4 Hb_000302_070 0.2056744164 - - PREDICTED: trafficking protein particle complex subunit 1 [Jatropha curcas]
5 Hb_093385_010 0.2097466617 - - PREDICTED: probable mannitol dehydrogenase [Pyrus x bretschneideri]
6 Hb_005601_030 0.2179275148 - - organic anion transporter, putative [Ricinus communis]
7 Hb_007617_040 0.2184294874 - - PREDICTED: syntaxin-112-like [Jatropha curcas]
8 Hb_115832_010 0.2297756799 - - transcription factor, putative [Ricinus communis]
9 Hb_173638_010 0.2408622844 - - NBS-LRR resistance protein RGH1 [Manihot esculenta]
10 Hb_168241_010 0.2467305204 - - hypothetical protein POPTR_0013s14620g, partial [Populus trichocarpa]
11 Hb_007413_020 0.2469495067 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000977_200 0.2472056909 - - PREDICTED: acyl-[acyl-carrier-protein] desaturase, chloroplastic-like [Jatropha curcas]
13 Hb_006973_060 0.2485954758 - - Uncharacterized protein TCM_038475 [Theobroma cacao]
14 Hb_000362_140 0.249454998 transcription factor TF Family: bZIP PREDICTED: basic leucine zipper 61-like [Jatropha curcas]
15 Hb_014705_010 0.2546479331 - - hypothetical protein JCGZ_21106 [Jatropha curcas]
16 Hb_000039_080 0.2549965743 - - cyclin d, putative [Ricinus communis]
17 Hb_130222_010 0.2558331487 - - hypothetical protein RCOM_1272620 [Ricinus communis]
18 Hb_007017_050 0.2565902688 - - conserved hypothetical protein [Ricinus communis]
19 Hb_012016_050 0.2578377834 - - hypothetical protein JCGZ_09036 [Jatropha curcas]
20 Hb_000808_120 0.2608238895 - - -

Gene co-expression network

sample Hb_000105_110 Hb_000105_110 Hb_002343_030 Hb_002343_030 Hb_000105_110--Hb_002343_030 Hb_000723_070 Hb_000723_070 Hb_000105_110--Hb_000723_070 Hb_000302_070 Hb_000302_070 Hb_000105_110--Hb_000302_070 Hb_093385_010 Hb_093385_010 Hb_000105_110--Hb_093385_010 Hb_005601_030 Hb_005601_030 Hb_000105_110--Hb_005601_030 Hb_007617_040 Hb_007617_040 Hb_000105_110--Hb_007617_040 Hb_002343_030--Hb_093385_010 Hb_000808_120 Hb_000808_120 Hb_002343_030--Hb_000808_120 Hb_002343_030--Hb_005601_030 Hb_053073_010 Hb_053073_010 Hb_002343_030--Hb_053073_010 Hb_000406_010 Hb_000406_010 Hb_002343_030--Hb_000406_010 Hb_006973_060 Hb_006973_060 Hb_000723_070--Hb_006973_060 Hb_000723_070--Hb_000302_070 Hb_184109_010 Hb_184109_010 Hb_000723_070--Hb_184109_010 Hb_000866_350 Hb_000866_350 Hb_000723_070--Hb_000866_350 Hb_168241_010 Hb_168241_010 Hb_000723_070--Hb_168241_010 Hb_000302_070--Hb_006973_060 Hb_000302_070--Hb_005601_030 Hb_000302_070--Hb_093385_010 Hb_000302_070--Hb_002343_030 Hb_093385_010--Hb_000406_010 Hb_000988_010 Hb_000988_010 Hb_093385_010--Hb_000988_010 Hb_000039_080 Hb_000039_080 Hb_093385_010--Hb_000039_080 Hb_187739_010 Hb_187739_010 Hb_093385_010--Hb_187739_010 Hb_183671_010 Hb_183671_010 Hb_005601_030--Hb_183671_010 Hb_115832_010 Hb_115832_010 Hb_005601_030--Hb_115832_010 Hb_001391_050 Hb_001391_050 Hb_005601_030--Hb_001391_050 Hb_019181_020 Hb_019181_020 Hb_005601_030--Hb_019181_020 Hb_047560_010 Hb_047560_010 Hb_005601_030--Hb_047560_010 Hb_012016_050 Hb_012016_050 Hb_007617_040--Hb_012016_050 Hb_000556_130 Hb_000556_130 Hb_007617_040--Hb_000556_130 Hb_128392_010 Hb_128392_010 Hb_007617_040--Hb_128392_010 Hb_021576_050 Hb_021576_050 Hb_007617_040--Hb_021576_050 Hb_003813_110 Hb_003813_110 Hb_007617_040--Hb_003813_110 Hb_001247_060 Hb_001247_060 Hb_007617_040--Hb_001247_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.23375 0.460918 12.4576 12.783 1.61373 0.682855
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis