Hb_000105_120

Information

Type -
Description -
Location Contig105: 157652-158214
Sequence    

Annotation

kegg
ID rcu:RCOM_1382800
description hypothetical protein
nr
ID XP_012093181.1
description PREDICTED: uncharacterized protein LOC105650827 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067LBE0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16386 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01698: 157618-160443
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000105_120 0.0 - - PREDICTED: uncharacterized protein LOC105650827 [Jatropha curcas]
2 Hb_000120_770 0.1333454689 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000327_110 0.1446766567 - - hypothetical protein JCGZ_06657 [Jatropha curcas]
4 Hb_006683_070 0.1455084519 - - PREDICTED: uncharacterized protein LOC105631443 [Jatropha curcas]
5 Hb_000984_240 0.1461662071 - - hypothetical protein JCGZ_15962 [Jatropha curcas]
6 Hb_012506_060 0.1536881468 - - hypothetical protein CICLE_v10029628mg [Citrus clementina]
7 Hb_000122_070 0.1545491762 - - hypothetical protein POPTR_0010s18960g [Populus trichocarpa]
8 Hb_003141_070 0.1558315439 - - PREDICTED: probable protein phosphatase 2C 51 [Jatropha curcas]
9 Hb_000167_050 0.1558521352 - - PREDICTED: uncharacterized protein LOC105641106 [Jatropha curcas]
10 Hb_000983_040 0.1561232426 - - PREDICTED: transmembrane protein 136 [Jatropha curcas]
11 Hb_001865_090 0.1561325627 - - hypothetical protein VITISV_005773 [Vitis vinifera]
12 Hb_002304_040 0.1561418073 - - PREDICTED: uncharacterized protein LOC105649623 isoform X2 [Jatropha curcas]
13 Hb_000300_660 0.1564916366 - - unknown [Glycine max]
14 Hb_001240_010 0.1581060533 - - PREDICTED: uncharacterized protein LOC105634101 [Jatropha curcas]
15 Hb_185255_010 0.1606019269 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 11-like [Jatropha curcas]
16 Hb_025098_010 0.1614035242 - - PREDICTED: protoheme IX farnesyltransferase, mitochondrial isoform X2 [Jatropha curcas]
17 Hb_006469_080 0.1616118079 - - conserved hypothetical protein [Ricinus communis]
18 Hb_015934_120 0.1619819749 - - PREDICTED: callose synthase 7 [Vitis vinifera]
19 Hb_000172_440 0.1622126984 - - PREDICTED: NADPH-dependent 1-acyldihydroxyacetone phosphate reductase [Jatropha curcas]
20 Hb_003050_250 0.1623531286 - - PREDICTED: uncharacterized protein At2g34460, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_000105_120 Hb_000105_120 Hb_000120_770 Hb_000120_770 Hb_000105_120--Hb_000120_770 Hb_000327_110 Hb_000327_110 Hb_000105_120--Hb_000327_110 Hb_006683_070 Hb_006683_070 Hb_000105_120--Hb_006683_070 Hb_000984_240 Hb_000984_240 Hb_000105_120--Hb_000984_240 Hb_012506_060 Hb_012506_060 Hb_000105_120--Hb_012506_060 Hb_000122_070 Hb_000122_070 Hb_000105_120--Hb_000122_070 Hb_001242_080 Hb_001242_080 Hb_000120_770--Hb_001242_080 Hb_001575_060 Hb_001575_060 Hb_000120_770--Hb_001575_060 Hb_002876_020 Hb_002876_020 Hb_000120_770--Hb_002876_020 Hb_001865_090 Hb_001865_090 Hb_000120_770--Hb_001865_090 Hb_003106_100 Hb_003106_100 Hb_000120_770--Hb_003106_100 Hb_004257_010 Hb_004257_010 Hb_000120_770--Hb_004257_010 Hb_009767_130 Hb_009767_130 Hb_000327_110--Hb_009767_130 Hb_174865_040 Hb_174865_040 Hb_000327_110--Hb_174865_040 Hb_000172_440 Hb_000172_440 Hb_000327_110--Hb_000172_440 Hb_000368_090 Hb_000368_090 Hb_000327_110--Hb_000368_090 Hb_001449_070 Hb_001449_070 Hb_000327_110--Hb_001449_070 Hb_015934_120 Hb_015934_120 Hb_000327_110--Hb_015934_120 Hb_185255_010 Hb_185255_010 Hb_006683_070--Hb_185255_010 Hb_006683_070--Hb_015934_120 Hb_000297_120 Hb_000297_120 Hb_006683_070--Hb_000297_120 Hb_001269_190 Hb_001269_190 Hb_006683_070--Hb_001269_190 Hb_025098_010 Hb_025098_010 Hb_006683_070--Hb_025098_010 Hb_005800_030 Hb_005800_030 Hb_006683_070--Hb_005800_030 Hb_001790_030 Hb_001790_030 Hb_000984_240--Hb_001790_030 Hb_000167_050 Hb_000167_050 Hb_000984_240--Hb_000167_050 Hb_000984_240--Hb_000120_770 Hb_000254_140 Hb_000254_140 Hb_000984_240--Hb_000254_140 Hb_000394_180 Hb_000394_180 Hb_000984_240--Hb_000394_180 Hb_003349_030 Hb_003349_030 Hb_000984_240--Hb_003349_030 Hb_069662_010 Hb_069662_010 Hb_012506_060--Hb_069662_010 Hb_000228_060 Hb_000228_060 Hb_012506_060--Hb_000228_060 Hb_012506_060--Hb_000122_070 Hb_004531_140 Hb_004531_140 Hb_012506_060--Hb_004531_140 Hb_018272_020 Hb_018272_020 Hb_012506_060--Hb_018272_020 Hb_001769_170 Hb_001769_170 Hb_012506_060--Hb_001769_170 Hb_000802_140 Hb_000802_140 Hb_000122_070--Hb_000802_140 Hb_006469_080 Hb_006469_080 Hb_000122_070--Hb_006469_080 Hb_002157_120 Hb_002157_120 Hb_000122_070--Hb_002157_120 Hb_000345_310 Hb_000345_310 Hb_000122_070--Hb_000345_310 Hb_000122_070--Hb_004531_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.3397 3.67643 8.29913 23.2293 5.127 16.471
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.1289 23.0972 12.4689 4.00801 27.5052

CAGE analysis