Hb_000106_060

Information

Type -
Description -
Location Contig106: 103123-103695
Sequence    

Annotation

kegg
ID rcu:RCOM_0011450
description hypothetical protein
nr
ID XP_012075284.1
description PREDICTED: uncharacterized protein LOC105636580 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067LFF3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06086 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 020_F22.ab1: 103007-103766

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000106_060 0.0 - - PREDICTED: uncharacterized protein LOC105636580 [Jatropha curcas]
2 Hb_170861_010 0.0557700526 - - Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis]
3 Hb_113945_010 0.06828117 - - Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis]
4 Hb_039096_010 0.0847822399 - - unknown [Populus trichocarpa]
5 Hb_000934_180 0.098474275 - - hypothetical protein JCGZ_25237 [Jatropha curcas]
6 Hb_002876_190 0.1049223912 transcription factor TF Family: GRAS hypothetical protein PRUPE_ppa017519mg [Prunus persica]
7 Hb_001775_130 0.1077389409 - - Prephenate dehydratase [Hevea brasiliensis]
8 Hb_007161_020 0.1109945523 - - PREDICTED: serine/threonine-protein kinase BRI1-like 2 [Jatropha curcas]
9 Hb_120357_010 0.122945615 - - Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis]
10 Hb_003371_040 0.1251038689 - - PREDICTED: uncharacterized protein LOC105650327 [Jatropha curcas]
11 Hb_000011_320 0.1274855493 - - PREDICTED: uncharacterized protein LOC105631328 [Jatropha curcas]
12 Hb_000429_030 0.1315085014 - - Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis]
13 Hb_080068_010 0.1412248205 - - PREDICTED: basic 7S globulin-like [Jatropha curcas]
14 Hb_003171_070 0.1513215718 - - PREDICTED: protein TRANSPARENT TESTA 12-like [Citrus sinensis]
15 Hb_003304_090 0.1529650443 - - PREDICTED: uncharacterized protein LOC105633680 [Jatropha curcas]
16 Hb_004397_010 0.1559125229 - - Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis]
17 Hb_000561_040 0.1597987748 - - PREDICTED: dirigent protein 19-like [Jatropha curcas]
18 Hb_001115_010 0.1617759668 - - PREDICTED: 4-coumarate--CoA ligase 2-like [Jatropha curcas]
19 Hb_000098_210 0.1619942987 - - PREDICTED: uncharacterized protein LOC105633345 [Jatropha curcas]
20 Hb_003212_020 0.1675799961 - - hypothetical protein PHAVU_009G114800g [Phaseolus vulgaris]

Gene co-expression network

sample Hb_000106_060 Hb_000106_060 Hb_170861_010 Hb_170861_010 Hb_000106_060--Hb_170861_010 Hb_113945_010 Hb_113945_010 Hb_000106_060--Hb_113945_010 Hb_039096_010 Hb_039096_010 Hb_000106_060--Hb_039096_010 Hb_000934_180 Hb_000934_180 Hb_000106_060--Hb_000934_180 Hb_002876_190 Hb_002876_190 Hb_000106_060--Hb_002876_190 Hb_001775_130 Hb_001775_130 Hb_000106_060--Hb_001775_130 Hb_170861_010--Hb_113945_010 Hb_170861_010--Hb_000934_180 Hb_170861_010--Hb_039096_010 Hb_120357_010 Hb_120357_010 Hb_170861_010--Hb_120357_010 Hb_170861_010--Hb_002876_190 Hb_113945_010--Hb_039096_010 Hb_113945_010--Hb_000934_180 Hb_007161_020 Hb_007161_020 Hb_113945_010--Hb_007161_020 Hb_113945_010--Hb_002876_190 Hb_039096_010--Hb_002876_190 Hb_039096_010--Hb_001775_130 Hb_039096_010--Hb_000934_180 Hb_000934_180--Hb_120357_010 Hb_000934_180--Hb_002876_190 Hb_002876_190--Hb_001775_130 Hb_003371_040 Hb_003371_040 Hb_002876_190--Hb_003371_040 Hb_006314_020 Hb_006314_020 Hb_002876_190--Hb_006314_020 Hb_001775_130--Hb_003371_040 Hb_003171_070 Hb_003171_070 Hb_001775_130--Hb_003171_070 Hb_001775_130--Hb_006314_020 Hb_001856_150 Hb_001856_150 Hb_001775_130--Hb_001856_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0465224 4.11926 2.24128 51.4877 0.0437143 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.170086 0.147687 26.2676 5.71607

CAGE analysis