Hb_000106_120

Information

Type -
Description -
Location Contig106: 151516-179163
Sequence    

Annotation

kegg
ID cam:101506124
description mediator of RNA polymerase II transcription subunit 15a-like
nr
ID KHN38008.1
description hypothetical protein glysoja_007050 [Glycine soja]
swissprot
ID F4I171
description Mediator of RNA polymerase II transcription subunit 15a OS=Arabidopsis thaliana GN=MED15A PE=1 SV=1
trembl
ID A0A0B2S019
description Uncharacterized protein OS=Glycine soja GN=glysoja_007050 PE=4 SV=1
Gene Ontology
ID GO:0003712
description mediator of rna polymerase ii transcription subunit 15a

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01971: 151502-157852 , PASA_asmbl_01972: 157959-160830 , PASA_asmbl_01973: 158486-160830 , PASA_asmbl_01974: 170927-171392 , PASA_asmbl_01975: 172640-173130 , PASA_asmbl_01976: 172640-173141 , PASA_asmbl_01977: 177851-179303 , PASA_asmbl_01978: 176511-179309 , PASA_asmbl_01979: 177081-177339
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000106_120 0.0 - - hypothetical protein glysoja_007050 [Glycine soja]
2 Hb_002477_090 0.0739421698 - - PREDICTED: uncharacterized protein LOC105631409 isoform X1 [Jatropha curcas]
3 Hb_000340_490 0.0747098877 - - PREDICTED: ankyrin-1-like [Jatropha curcas]
4 Hb_006909_010 0.0863002399 - - 5-oxoprolinase, putative [Ricinus communis]
5 Hb_002639_080 0.0879039871 - - PREDICTED: large proline-rich protein BAG6 isoform X1 [Jatropha curcas]
6 Hb_000684_290 0.0891830833 - - ubiquitin protein ligase E3a, putative [Ricinus communis]
7 Hb_000069_120 0.090011718 - - PREDICTED: uncharacterized protein LOC105124742 isoform X1 [Populus euphratica]
8 Hb_000053_040 0.0903475434 - - hypothetical protein CISIN_1g0010392mg, partial [Citrus sinensis]
9 Hb_017358_040 0.0912250291 - - PREDICTED: RNA-dependent RNA polymerase 6-like [Jatropha curcas]
10 Hb_001227_080 0.0931210135 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
11 Hb_001761_130 0.0933695842 - - PREDICTED: uncharacterized protein LOC105646118 isoform X1 [Jatropha curcas]
12 Hb_001417_030 0.0947576237 - - PREDICTED: inactive poly [ADP-ribose] polymerase RCD1 [Jatropha curcas]
13 Hb_006198_120 0.0952499001 - - PREDICTED: guanine nucleotide-binding protein-like NSN1 [Jatropha curcas]
14 Hb_009079_030 0.0955582252 - - PREDICTED: general transcription factor IIF subunit 2 [Jatropha curcas]
15 Hb_004934_050 0.0957439016 - - Eukaryotic release factor 1-3 isoform 1 [Theobroma cacao]
16 Hb_001062_010 0.0962338579 - - PREDICTED: CWF19-like protein 2 [Jatropha curcas]
17 Hb_010021_010 0.0962982052 - - unnamed protein product [Coffea canephora]
18 Hb_010174_110 0.097139607 - - hypothetical protein JCGZ_17880 [Jatropha curcas]
19 Hb_003913_070 0.0984923537 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 30 [Populus euphratica]
20 Hb_019337_020 0.0989704752 - - K+ uptake permease 11 isoform 1 [Theobroma cacao]

Gene co-expression network

sample Hb_000106_120 Hb_000106_120 Hb_002477_090 Hb_002477_090 Hb_000106_120--Hb_002477_090 Hb_000340_490 Hb_000340_490 Hb_000106_120--Hb_000340_490 Hb_006909_010 Hb_006909_010 Hb_000106_120--Hb_006909_010 Hb_002639_080 Hb_002639_080 Hb_000106_120--Hb_002639_080 Hb_000684_290 Hb_000684_290 Hb_000106_120--Hb_000684_290 Hb_000069_120 Hb_000069_120 Hb_000106_120--Hb_000069_120 Hb_003913_070 Hb_003913_070 Hb_002477_090--Hb_003913_070 Hb_004934_050 Hb_004934_050 Hb_002477_090--Hb_004934_050 Hb_001761_130 Hb_001761_130 Hb_002477_090--Hb_001761_130 Hb_001123_050 Hb_001123_050 Hb_002477_090--Hb_001123_050 Hb_003058_060 Hb_003058_060 Hb_002477_090--Hb_003058_060 Hb_000340_490--Hb_002639_080 Hb_071130_010 Hb_071130_010 Hb_000340_490--Hb_071130_010 Hb_000340_490--Hb_004934_050 Hb_000340_490--Hb_000069_120 Hb_001628_070 Hb_001628_070 Hb_000340_490--Hb_001628_070 Hb_164898_010 Hb_164898_010 Hb_006909_010--Hb_164898_010 Hb_004449_080 Hb_004449_080 Hb_006909_010--Hb_004449_080 Hb_003498_130 Hb_003498_130 Hb_006909_010--Hb_003498_130 Hb_000028_390 Hb_000028_390 Hb_006909_010--Hb_000028_390 Hb_003294_090 Hb_003294_090 Hb_006909_010--Hb_003294_090 Hb_001188_020 Hb_001188_020 Hb_002639_080--Hb_001188_020 Hb_041327_010 Hb_041327_010 Hb_002639_080--Hb_041327_010 Hb_002639_080--Hb_071130_010 Hb_004143_160 Hb_004143_160 Hb_002639_080--Hb_004143_160 Hb_002639_080--Hb_000069_120 Hb_007632_010 Hb_007632_010 Hb_002639_080--Hb_007632_010 Hb_002005_080 Hb_002005_080 Hb_000684_290--Hb_002005_080 Hb_017358_040 Hb_017358_040 Hb_000684_290--Hb_017358_040 Hb_000684_290--Hb_000340_490 Hb_000684_290--Hb_002477_090 Hb_000684_290--Hb_001761_130 Hb_000230_260 Hb_000230_260 Hb_000069_120--Hb_000230_260 Hb_000069_120--Hb_071130_010 Hb_000069_120--Hb_041327_010 Hb_000069_120--Hb_017358_040 Hb_000537_050 Hb_000537_050 Hb_000069_120--Hb_000537_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.93016 14.0901 6.2364 9.53764 13.0681 13.3056
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.0674 9.27035 11.128 27.8343 17.4078

CAGE analysis