Hb_000106_130

Information

Type -
Description -
Location Contig106: 183948-187711
Sequence    

Annotation

kegg
ID vvi:104878063
description uncharacterized LOC104878063
nr
ID CBI40656.3
description unnamed protein product [Vitis vinifera]
swissprot
ID -
description -
trembl
ID F6I6N5
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_13s0067g02200 PE=4 SV=1
Gene Ontology
ID GO:0003712
description mediator of rna polymerase ii transcription subunit 15a-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01980: 183721-187139 , PASA_asmbl_01981: 184580-184931
cDNA
(Sanger)
(ID:Location)		 006_K16.ab1: 183734-187098 , 043_P10.ab1: 183787-187059

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000106_130 0.0 - - unnamed protein product [Vitis vinifera]
2 Hb_000313_300 0.0569807035 - - PREDICTED: F-box protein SKIP19-like [Jatropha curcas]
3 Hb_001357_380 0.0710614811 - - PREDICTED: probable tetraacyldisaccharide 4'-kinase, mitochondrial isoform X1 [Jatropha curcas]
4 Hb_000211_110 0.0867302668 - - PREDICTED: U11/U12 small nuclear ribonucleoprotein 35 kDa protein isoform X1 [Jatropha curcas]
5 Hb_000785_030 0.0881585363 - - hypothetical protein RCOM_0808030 [Ricinus communis]
6 Hb_001894_030 0.0889128621 - - Nucleic acid-binding, OB-fold-like protein [Theobroma cacao]
7 Hb_000174_110 0.0922161539 - - PREDICTED: INO80 complex subunit D-like [Jatropha curcas]
8 Hb_097783_020 0.094535187 - - PREDICTED: small G protein signaling modulator 1 [Jatropha curcas]
9 Hb_009222_010 0.0953936062 - - WD-repeat protein, putative [Ricinus communis]
10 Hb_001486_340 0.099070018 - - PREDICTED: double-stranded RNA-binding protein 1-like [Jatropha curcas]
11 Hb_001142_050 0.0994131509 - - PREDICTED: coiled-coil domain-containing protein 12 [Jatropha curcas]
12 Hb_005656_210 0.1002929618 - - PREDICTED: uncharacterized protein LOC105637440 [Jatropha curcas]
13 Hb_000392_050 0.1034781845 - - PREDICTED: uncharacterized protein LOC105640540 isoform X2 [Jatropha curcas]
14 Hb_011970_030 0.1040302419 - - PREDICTED: uncharacterized protein LOC105641805 [Jatropha curcas]
15 Hb_011848_010 0.1042613908 - - PREDICTED: 40S ribosomal protein S4-3 [Jatropha curcas]
16 Hb_010968_010 0.1044005303 - - Golgi snare 12 isoform 1 [Theobroma cacao]
17 Hb_033834_030 0.1044769573 - - PREDICTED: nucleolar complex protein 2 homolog isoform X1 [Jatropha curcas]
18 Hb_027043_020 0.1047471647 - - conserved hypothetical protein [Ricinus communis]
19 Hb_001454_400 0.104794507 - - PREDICTED: dynein light chain 1, cytoplasmic [Jatropha curcas]
20 Hb_006916_040 0.1054168583 - - 60S ribosomal protein L7a, putative [Ricinus communis]

Gene co-expression network

sample Hb_000106_130 Hb_000106_130 Hb_000313_300 Hb_000313_300 Hb_000106_130--Hb_000313_300 Hb_001357_380 Hb_001357_380 Hb_000106_130--Hb_001357_380 Hb_000211_110 Hb_000211_110 Hb_000106_130--Hb_000211_110 Hb_000785_030 Hb_000785_030 Hb_000106_130--Hb_000785_030 Hb_001894_030 Hb_001894_030 Hb_000106_130--Hb_001894_030 Hb_000174_110 Hb_000174_110 Hb_000106_130--Hb_000174_110 Hb_097783_020 Hb_097783_020 Hb_000313_300--Hb_097783_020 Hb_000313_300--Hb_000211_110 Hb_000313_300--Hb_001357_380 Hb_000313_300--Hb_000785_030 Hb_006916_040 Hb_006916_040 Hb_000313_300--Hb_006916_040 Hb_001357_380--Hb_000211_110 Hb_000059_140 Hb_000059_140 Hb_001357_380--Hb_000059_140 Hb_011942_080 Hb_011942_080 Hb_001357_380--Hb_011942_080 Hb_001486_340 Hb_001486_340 Hb_001357_380--Hb_001486_340 Hb_001357_380--Hb_001894_030 Hb_000211_110--Hb_001894_030 Hb_000920_280 Hb_000920_280 Hb_000211_110--Hb_000920_280 Hb_000640_020 Hb_000640_020 Hb_000211_110--Hb_000640_020 Hb_011848_010 Hb_011848_010 Hb_000211_110--Hb_011848_010 Hb_000211_110--Hb_000059_140 Hb_000392_050 Hb_000392_050 Hb_000785_030--Hb_000392_050 Hb_009222_010 Hb_009222_010 Hb_000785_030--Hb_009222_010 Hb_000959_270 Hb_000959_270 Hb_000785_030--Hb_000959_270 Hb_002942_050 Hb_002942_050 Hb_000785_030--Hb_002942_050 Hb_001910_020 Hb_001910_020 Hb_000785_030--Hb_001910_020 Hb_000785_030--Hb_000059_140 Hb_000617_220 Hb_000617_220 Hb_001894_030--Hb_000617_220 Hb_001894_030--Hb_000640_020 Hb_001894_030--Hb_011848_010 Hb_004701_030 Hb_004701_030 Hb_001894_030--Hb_004701_030 Hb_010068_040 Hb_010068_040 Hb_000174_110--Hb_010068_040 Hb_006620_020 Hb_006620_020 Hb_000174_110--Hb_006620_020 Hb_005618_160 Hb_005618_160 Hb_000174_110--Hb_005618_160 Hb_054865_100 Hb_054865_100 Hb_000174_110--Hb_054865_100 Hb_002175_030 Hb_002175_030 Hb_000174_110--Hb_002175_030 Hb_000174_110--Hb_001486_340
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
423.003 225.169 320.144 265.573 507.43 421.794
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
367.724 316.786 114.501 175.218 61.6633

CAGE analysis