Hb_000107_050

Information

Type -
Description -
Location Contig107: 50125-51905
Sequence    

Annotation

kegg
ID rcu:RCOM_1315040
description 60S ribosomal protein L9, putative
nr
ID XP_002518960.1
description 60S ribosomal protein L9, putative [Ricinus communis]
swissprot
ID P49210
description 60S ribosomal protein L9 OS=Oryza sativa subsp. japonica GN=RPL9 PE=2 SV=3
trembl
ID B9RYZ1
description 60S ribosomal protein L9, putative OS=Ricinus communis GN=RCOM_1315040 PE=4 SV=1
Gene Ontology
ID GO:0005840
description 60s ribosomal protein l9

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02128: 50173-51855
cDNA
(Sanger)
(ID:Location)		 031_I23.ab1: 50164-51813

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000107_050 0.0 - - 60S ribosomal protein L9, putative [Ricinus communis]
2 Hb_000933_180 0.0597679807 - - PREDICTED: chorismate mutase 3, chloroplastic [Jatropha curcas]
3 Hb_010128_130 0.0632543478 - - PREDICTED: G patch domain-containing protein 8 isoform X1 [Jatropha curcas]
4 Hb_011794_090 0.0714709062 - - PREDICTED: uncharacterized protein LOC105642993 [Jatropha curcas]
5 Hb_001741_140 0.0715815802 - - PREDICTED: 60S ribosomal protein L7-2-like [Jatropha curcas]
6 Hb_000494_020 0.0745829831 - - PREDICTED: actin-related protein 2/3 complex subunit 5A [Jatropha curcas]
7 Hb_000690_080 0.0756924539 transcription factor TF Family: HB -
8 Hb_007576_040 0.07766674 - - PREDICTED: uncharacterized protein LOC105169221 [Sesamum indicum]
9 Hb_010661_030 0.080720598 - - hypothetical protein PHAVU_009G146200g [Phaseolus vulgaris]
10 Hb_009767_120 0.0809405147 - - PREDICTED: probable prefoldin subunit 2 [Jatropha curcas]
11 Hb_143629_010 0.0835201811 - - transferase, transferring glycosyl groups, putative [Ricinus communis]
12 Hb_000977_130 0.0836178561 - - PREDICTED: U6 snRNA-associated Sm-like protein LSm6 [Populus euphratica]
13 Hb_001252_100 0.0836767746 - - PREDICTED: CASP-like protein 5B2 [Jatropha curcas]
14 Hb_000141_060 0.085831719 - - PREDICTED: uncharacterized protein LOC105632248 [Jatropha curcas]
15 Hb_002272_250 0.0859827118 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
16 Hb_003058_130 0.0871467617 - - PREDICTED: protein N-lysine methyltransferase METTL21A isoform X1 [Jatropha curcas]
17 Hb_002233_150 0.0875878633 - - PREDICTED: uncharacterized protein LOC105633093 [Jatropha curcas]
18 Hb_148912_010 0.088440487 - - conserved hypothetical protein [Ricinus communis]
19 Hb_001006_170 0.0906245626 - - Endonuclease V, putative [Ricinus communis]
20 Hb_003392_040 0.0912697875 - - PREDICTED: D-aminoacyl-tRNA deacylase [Jatropha curcas]

Gene co-expression network

sample Hb_000107_050 Hb_000107_050 Hb_000933_180 Hb_000933_180 Hb_000107_050--Hb_000933_180 Hb_010128_130 Hb_010128_130 Hb_000107_050--Hb_010128_130 Hb_011794_090 Hb_011794_090 Hb_000107_050--Hb_011794_090 Hb_001741_140 Hb_001741_140 Hb_000107_050--Hb_001741_140 Hb_000494_020 Hb_000494_020 Hb_000107_050--Hb_000494_020 Hb_000690_080 Hb_000690_080 Hb_000107_050--Hb_000690_080 Hb_009767_120 Hb_009767_120 Hb_000933_180--Hb_009767_120 Hb_011360_140 Hb_011360_140 Hb_000933_180--Hb_011360_140 Hb_000933_180--Hb_000494_020 Hb_002233_150 Hb_002233_150 Hb_000933_180--Hb_002233_150 Hb_000933_180--Hb_010128_130 Hb_010128_130--Hb_001741_140 Hb_001221_230 Hb_001221_230 Hb_010128_130--Hb_001221_230 Hb_010128_130--Hb_009767_120 Hb_012675_090 Hb_012675_090 Hb_010128_130--Hb_012675_090 Hb_003688_100 Hb_003688_100 Hb_011794_090--Hb_003688_100 Hb_004204_070 Hb_004204_070 Hb_011794_090--Hb_004204_070 Hb_002272_250 Hb_002272_250 Hb_011794_090--Hb_002272_250 Hb_004722_060 Hb_004722_060 Hb_011794_090--Hb_004722_060 Hb_000977_130 Hb_000977_130 Hb_011794_090--Hb_000977_130 Hb_002997_170 Hb_002997_170 Hb_001741_140--Hb_002997_170 Hb_143629_010 Hb_143629_010 Hb_001741_140--Hb_143629_010 Hb_000997_020 Hb_000997_020 Hb_001741_140--Hb_000997_020 Hb_000905_190 Hb_000905_190 Hb_001741_140--Hb_000905_190 Hb_010407_040 Hb_010407_040 Hb_000494_020--Hb_010407_040 Hb_002105_090 Hb_002105_090 Hb_000494_020--Hb_002105_090 Hb_003363_110 Hb_003363_110 Hb_000494_020--Hb_003363_110 Hb_000163_160 Hb_000163_160 Hb_000494_020--Hb_000163_160 Hb_001246_090 Hb_001246_090 Hb_000494_020--Hb_001246_090 Hb_004944_010 Hb_004944_010 Hb_000690_080--Hb_004944_010 Hb_000690_080--Hb_009767_120 Hb_000690_080--Hb_000977_130 Hb_141131_010 Hb_141131_010 Hb_000690_080--Hb_141131_010 Hb_003874_020 Hb_003874_020 Hb_000690_080--Hb_003874_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
476.827 74.9807 172.28 133.803 363.938 378.227
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
301.42 411.425 202.445 155.898 71.5603

CAGE analysis