Hb_000107_090

Information

Type -
Description -
Location Contig107: 71466-78741
Sequence    

Annotation

kegg
ID rcu:RCOM_0341920
description kinesin, putative
nr
ID XP_012080843.1
description PREDICTED: kinesin KP1 [Jatropha curcas]
swissprot
ID O81635
description Kinesin-4 OS=Arabidopsis thaliana GN=ATK4 PE=1 SV=2
trembl
ID A0A067K3C7
description Kinesin-like protein OS=Jatropha curcas GN=JCGZ_16207 PE=3 SV=1
Gene Ontology
ID GO:0005871
description kinesin kp1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02133: 74406-76764 , PASA_asmbl_02134: 71404-75811 , PASA_asmbl_02136: 77360-78164
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000107_090 0.0 - - PREDICTED: kinesin KP1 [Jatropha curcas]
2 Hb_008165_050 0.0957092451 - - hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis]
3 Hb_000272_030 0.1034978134 - - PREDICTED: WD repeat-containing protein 76 isoform X1 [Jatropha curcas]
4 Hb_004117_370 0.1125251896 - - PREDICTED: U-box domain-containing protein 16 [Jatropha curcas]
5 Hb_000260_410 0.1250440872 - - PREDICTED: protein LURP-one-related 8 [Jatropha curcas]
6 Hb_000787_210 0.1380484944 - - conserved hypothetical protein [Ricinus communis]
7 Hb_024066_040 0.1391839799 - - PREDICTED: uncharacterized protein At1g04910 [Jatropha curcas]
8 Hb_000127_100 0.1394392343 - - PREDICTED: myb-related transcription factor, partner of profilin-like [Populus euphratica]
9 Hb_031862_120 0.1406875093 - - PREDICTED: root phototropism protein 3 [Jatropha curcas]
10 Hb_001242_040 0.1407462568 - - PREDICTED: myb-related transcription factor, partner of profilin-like [Populus euphratica]
11 Hb_000167_100 0.1411775955 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
12 Hb_002838_010 0.1413958677 - - AGPase large subunit protein [Hevea brasiliensis]
13 Hb_000181_330 0.1420656116 - - ubiquitin ligase protein cop1, putative [Ricinus communis]
14 Hb_000120_090 0.1464138035 - - PREDICTED: phosphoinositide phospholipase C 4-like [Jatropha curcas]
15 Hb_006570_060 0.1465960245 - - PREDICTED: uncharacterized protein LOC105635332 [Jatropha curcas]
16 Hb_019863_050 0.1478458467 - - PREDICTED: uncharacterized protein LOC103343426 [Prunus mume]
17 Hb_000320_390 0.1481097067 transcription factor TF Family: MYB-related PREDICTED: transcription factor CPC-like [Jatropha curcas]
18 Hb_000556_070 0.1486399744 - - PREDICTED: receptor-like serine/threonine-protein kinase At2g45590 [Jatropha curcas]
19 Hb_000941_090 0.1503668748 - - PREDICTED: protein trichome birefringence [Jatropha curcas]
20 Hb_004678_010 0.1542553298 transcription factor TF Family: Orphans Salt-tolerance protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000107_090 Hb_000107_090 Hb_008165_050 Hb_008165_050 Hb_000107_090--Hb_008165_050 Hb_000272_030 Hb_000272_030 Hb_000107_090--Hb_000272_030 Hb_004117_370 Hb_004117_370 Hb_000107_090--Hb_004117_370 Hb_000260_410 Hb_000260_410 Hb_000107_090--Hb_000260_410 Hb_000787_210 Hb_000787_210 Hb_000107_090--Hb_000787_210 Hb_024066_040 Hb_024066_040 Hb_000107_090--Hb_024066_040 Hb_001242_040 Hb_001242_040 Hb_008165_050--Hb_001242_040 Hb_000320_390 Hb_000320_390 Hb_008165_050--Hb_000320_390 Hb_008165_050--Hb_000272_030 Hb_000127_100 Hb_000127_100 Hb_008165_050--Hb_000127_100 Hb_008165_050--Hb_004117_370 Hb_006570_060 Hb_006570_060 Hb_000272_030--Hb_006570_060 Hb_000272_030--Hb_000260_410 Hb_000941_090 Hb_000941_090 Hb_000272_030--Hb_000941_090 Hb_002838_010 Hb_002838_010 Hb_000272_030--Hb_002838_010 Hb_000173_270 Hb_000173_270 Hb_000272_030--Hb_000173_270 Hb_012833_010 Hb_012833_010 Hb_004117_370--Hb_012833_010 Hb_004531_170 Hb_004531_170 Hb_004117_370--Hb_004531_170 Hb_000982_100 Hb_000982_100 Hb_004117_370--Hb_000982_100 Hb_004117_370--Hb_000127_100 Hb_000167_100 Hb_000167_100 Hb_004117_370--Hb_000167_100 Hb_000260_410--Hb_000173_270 Hb_017491_010 Hb_017491_010 Hb_000260_410--Hb_017491_010 Hb_001629_120 Hb_001629_120 Hb_000260_410--Hb_001629_120 Hb_000260_410--Hb_000941_090 Hb_000818_090 Hb_000818_090 Hb_000260_410--Hb_000818_090 Hb_000103_230 Hb_000103_230 Hb_000787_210--Hb_000103_230 Hb_020141_030 Hb_020141_030 Hb_000787_210--Hb_020141_030 Hb_000056_110 Hb_000056_110 Hb_000787_210--Hb_000056_110 Hb_000208_270 Hb_000208_270 Hb_000787_210--Hb_000208_270 Hb_034507_050 Hb_034507_050 Hb_000787_210--Hb_034507_050 Hb_001252_030 Hb_001252_030 Hb_000787_210--Hb_001252_030 Hb_024066_040--Hb_034507_050 Hb_000069_500 Hb_000069_500 Hb_024066_040--Hb_000069_500 Hb_002811_050 Hb_002811_050 Hb_024066_040--Hb_002811_050 Hb_024066_040--Hb_000787_210 Hb_024066_040--Hb_004117_370
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.178023 2.28936 2.45112 2.28389 0.0680934 0.0765426
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0588858 0.0810925 0.110777 0.229758 3.95371

CAGE analysis