Hb_000107_130

Information

Type -
Description -
Location Contig107: 102160-112095
Sequence    

Annotation

kegg
ID rcu:RCOM_0341680
description multicopper oxidase, putative (EC:1.10.3.3)
nr
ID XP_002523381.1
description multicopper oxidase, putative [Ricinus communis]
swissprot
ID Q00624
description L-ascorbate oxidase homolog OS=Brassica napus GN=Bp10 PE=2 SV=1
trembl
ID B9SBL2
description Multicopper oxidase, putative OS=Ricinus communis GN=RCOM_0341680 PE=4 SV=1
Gene Ontology
ID GO:0005507
description l-ascorbate oxidase homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02147: 110077-110618
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000107_130 0.0 - - multicopper oxidase, putative [Ricinus communis]
2 Hb_000060_110 0.1191764043 - - PREDICTED: uncharacterized protein LOC105649714 [Jatropha curcas]
3 Hb_116436_010 0.1771425283 - - PREDICTED: uncharacterized protein LOC105766967 [Gossypium raimondii]
4 Hb_000005_120 0.1854838127 transcription factor TF Family: C2H2 PREDICTED: protein SENSITIVE TO PROTON RHIZOTOXICITY 1 [Jatropha curcas]
5 Hb_000011_130 0.1854838127 - - lipase [Ricinus communis]
6 Hb_000046_140 0.1854838127 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000081_070 0.1854838127 - - -
8 Hb_000171_010 0.1854838127 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
9 Hb_000189_040 0.1854838127 - - hypothetical protein [Trichoderma aureoviride]
10 Hb_000210_170 0.1854838127 - - -
11 Hb_000252_010 0.1854838127 - - -
12 Hb_000288_040 0.1854838127 - - -
13 Hb_000300_490 0.1854838127 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000317_500 0.1854838127 - - -
15 Hb_000329_680 0.1854838127 - - hypothetical protein JCGZ_14616 [Jatropha curcas]
16 Hb_000401_060 0.1854838127 - - PREDICTED: uncharacterized protein LOC105803540 [Gossypium raimondii]
17 Hb_000603_090 0.1854838127 - - -
18 Hb_000700_050 0.1854838127 - - PREDICTED: pleiotropic drug resistance protein 1-like isoform X5 [Jatropha curcas]
19 Hb_000701_010 0.1854838127 - - hypothetical protein, partial [Pseudomonas fluorescens]
20 Hb_000747_020 0.1854838127 - - PREDICTED: uncharacterized protein LOC104216022, partial [Nicotiana sylvestris]

Gene co-expression network

sample Hb_000107_130 Hb_000107_130 Hb_000060_110 Hb_000060_110 Hb_000107_130--Hb_000060_110 Hb_116436_010 Hb_116436_010 Hb_000107_130--Hb_116436_010 Hb_000005_120 Hb_000005_120 Hb_000107_130--Hb_000005_120 Hb_000011_130 Hb_000011_130 Hb_000107_130--Hb_000011_130 Hb_000046_140 Hb_000046_140 Hb_000107_130--Hb_000046_140 Hb_000081_070 Hb_000081_070 Hb_000107_130--Hb_000081_070 Hb_000060_110--Hb_000005_120 Hb_000060_110--Hb_000011_130 Hb_000060_110--Hb_000046_140 Hb_000060_110--Hb_000081_070 Hb_000171_010 Hb_000171_010 Hb_000060_110--Hb_000171_010 Hb_007127_010 Hb_007127_010 Hb_116436_010--Hb_007127_010 Hb_002890_190 Hb_002890_190 Hb_116436_010--Hb_002890_190 Hb_001104_040 Hb_001104_040 Hb_116436_010--Hb_001104_040 Hb_092043_020 Hb_092043_020 Hb_116436_010--Hb_092043_020 Hb_002900_060 Hb_002900_060 Hb_116436_010--Hb_002900_060 Hb_000005_120--Hb_000011_130 Hb_000005_120--Hb_000046_140 Hb_000005_120--Hb_000081_070 Hb_000005_120--Hb_000171_010 Hb_000189_040 Hb_000189_040 Hb_000005_120--Hb_000189_040 Hb_000210_170 Hb_000210_170 Hb_000005_120--Hb_000210_170 Hb_000005_120--Hb_000011_130 Hb_000005_120--Hb_000046_140 Hb_000005_120--Hb_000081_070 Hb_000005_120--Hb_000171_010 Hb_000005_120--Hb_000189_040 Hb_000005_120--Hb_000210_170 Hb_000005_120--Hb_000011_130 Hb_000005_120--Hb_000046_140 Hb_000005_120--Hb_000081_070 Hb_000005_120--Hb_000171_010 Hb_000005_120--Hb_000189_040 Hb_000005_120--Hb_000210_170 Hb_000005_120--Hb_000011_130 Hb_000005_120--Hb_000046_140 Hb_000005_120--Hb_000081_070 Hb_000005_120--Hb_000171_010 Hb_000005_120--Hb_000189_040 Hb_000005_120--Hb_000210_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.106022 0.491568 0.0678164 0.0306214 11.3461 0.0373996
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.032475 0 0.00429226 0.0462336

CAGE analysis