Hb_000107_140

Information

Type -
Description -
Location Contig107: 104512-104957
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02146: 104498-106493
cDNA
(Sanger)
(ID:Location)		 020_O05.ab1: 104525-106493 , 044_H16.ab1: 104525-106493 , 048_B15.ab1: 104500-106489 , 051_N10.ab1: 104500-106489

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000107_140 0.0 - - -
2 Hb_144898_010 0.0965640861 - - PREDICTED: 60S ribosomal protein L7-2-like [Jatropha curcas]
3 Hb_000622_100 0.1175628159 - - PREDICTED: pre-rRNA-processing protein RIX1-like [Jatropha curcas]
4 Hb_073367_010 0.1212501385 - - PREDICTED: origin of replication complex subunit 2 [Jatropha curcas]
5 Hb_011174_010 0.1444285718 - - hypothetical protein JCGZ_10122 [Jatropha curcas]
6 Hb_004117_180 0.147711803 - - -
7 Hb_004607_120 0.1490901023 - - PREDICTED: zinc finger A20 and AN1 domain-containing stress-associated protein 8 [Jatropha curcas]
8 Hb_012305_040 0.1537147902 - - PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 9A-like [Jatropha curcas]
9 Hb_073339_010 0.1556065801 - - hypothetical protein 30 [Hevea brasiliensis]
10 Hb_011016_090 0.1563627374 - - PREDICTED: 50S ribosomal protein L24, chloroplastic [Populus euphratica]
11 Hb_004241_040 0.1564000853 - - -
12 Hb_027445_060 0.1592716613 - - PREDICTED: pescadillo homolog isoform X1 [Jatropha curcas]
13 Hb_002863_010 0.1594972229 - - PREDICTED: probable E3 ubiquitin-protein ligase RNF144A-B [Jatropha curcas]
14 Hb_005305_060 0.1623065878 - - hypothetical protein MIMGU_mgv1a015111mg [Erythranthe guttata]
15 Hb_005735_030 0.1649263366 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000366_100 0.1653057553 - - 60S ribosomal protein L7aA [Hevea brasiliensis]
17 Hb_004712_180 0.1656883918 - - conserved hypothetical protein [Ricinus communis]
18 Hb_012807_080 0.1659302361 - - hypothetical protein CICLE_v10028099mg [Citrus clementina]
19 Hb_004662_010 0.1664271248 - - Nascent polypeptide-associated complex subunit beta [Medicago truncatula]
20 Hb_003633_130 0.1679986905 - - PREDICTED: uncharacterized protein LOC105647466 [Jatropha curcas]

Gene co-expression network

sample Hb_000107_140 Hb_000107_140 Hb_144898_010 Hb_144898_010 Hb_000107_140--Hb_144898_010 Hb_000622_100 Hb_000622_100 Hb_000107_140--Hb_000622_100 Hb_073367_010 Hb_073367_010 Hb_000107_140--Hb_073367_010 Hb_011174_010 Hb_011174_010 Hb_000107_140--Hb_011174_010 Hb_004117_180 Hb_004117_180 Hb_000107_140--Hb_004117_180 Hb_004607_120 Hb_004607_120 Hb_000107_140--Hb_004607_120 Hb_181320_010 Hb_181320_010 Hb_144898_010--Hb_181320_010 Hb_005305_060 Hb_005305_060 Hb_144898_010--Hb_005305_060 Hb_001722_020 Hb_001722_020 Hb_144898_010--Hb_001722_020 Hb_005054_070 Hb_005054_070 Hb_144898_010--Hb_005054_070 Hb_012807_080 Hb_012807_080 Hb_144898_010--Hb_012807_080 Hb_007632_250 Hb_007632_250 Hb_000622_100--Hb_007632_250 Hb_000622_100--Hb_011174_010 Hb_000622_100--Hb_073367_010 Hb_000189_530 Hb_000189_530 Hb_000622_100--Hb_000189_530 Hb_000617_320 Hb_000617_320 Hb_000622_100--Hb_000617_320 Hb_119583_010 Hb_119583_010 Hb_000622_100--Hb_119583_010 Hb_000065_080 Hb_000065_080 Hb_073367_010--Hb_000065_080 Hb_004712_180 Hb_004712_180 Hb_073367_010--Hb_004712_180 Hb_073367_010--Hb_011174_010 Hb_003106_130 Hb_003106_130 Hb_073367_010--Hb_003106_130 Hb_002235_150 Hb_002235_150 Hb_073367_010--Hb_002235_150 Hb_002272_260 Hb_002272_260 Hb_011174_010--Hb_002272_260 Hb_011174_010--Hb_004117_180 Hb_011016_090 Hb_011016_090 Hb_011174_010--Hb_011016_090 Hb_000771_100 Hb_000771_100 Hb_011174_010--Hb_000771_100 Hb_000193_350 Hb_000193_350 Hb_004117_180--Hb_000193_350 Hb_004117_180--Hb_011016_090 Hb_000101_090 Hb_000101_090 Hb_004117_180--Hb_000101_090 Hb_102156_010 Hb_102156_010 Hb_004117_180--Hb_102156_010 Hb_004117_180--Hb_002272_260 Hb_044662_040 Hb_044662_040 Hb_004607_120--Hb_044662_040 Hb_002863_010 Hb_002863_010 Hb_004607_120--Hb_002863_010 Hb_004502_030 Hb_004502_030 Hb_004607_120--Hb_004502_030 Hb_004607_120--Hb_007632_250 Hb_004607_120--Hb_002235_150 Hb_004607_120--Hb_000622_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
362.184 61.5418 17.576 177.494 441.451 961.665
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
418.997 401.845 62.8122 52.3864 21.3337

CAGE analysis