Hb_000107_150

Information

Type -
Description -
Location Contig107: 114116-116098
Sequence    

Annotation

kegg
ID rcu:RCOM_1378650
description 40S ribosomal protein S4, putative
nr
ID XP_012080847.1
description PREDICTED: 40S ribosomal protein S4-3 [Jatropha curcas]
swissprot
ID P46300
description 40S ribosomal protein S4 OS=Solanum tuberosum GN=RPS4 PE=2 SV=1
trembl
ID A0A067K6J4
description 40S ribosomal protein S4 OS=Jatropha curcas GN=JCGZ_16213 PE=3 SV=1
Gene Ontology
ID GO:0005840
description 40s ribosomal protein s4-3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02148: 114711-116033 , PASA_asmbl_02149: 114082-116033
cDNA
(Sanger)
(ID:Location)		 001_I07.ab1: 114082-115713 , 006_H20.ab1: 114082-115661 , 010_E13.ab1: 114711-115365 , 028_K09.ab1: 114136-115652

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000107_150 0.0 - - PREDICTED: 40S ribosomal protein S4-3 [Jatropha curcas]
2 Hb_007827_010 0.0831893276 - - PREDICTED: uncharacterized protein C12B10.15c [Jatropha curcas]
3 Hb_001240_010 0.0876771782 - - PREDICTED: uncharacterized protein LOC105634101 [Jatropha curcas]
4 Hb_002872_050 0.0881750285 - - PREDICTED: thioredoxin-like 3-2, chloroplastic [Jatropha curcas]
5 Hb_001728_060 0.0891680042 - - PREDICTED: uncharacterized protein LOC105632289 [Jatropha curcas]
6 Hb_003020_260 0.0931586477 - - PREDICTED: metal tolerance protein B [Jatropha curcas]
7 Hb_014720_110 0.0931655809 - - PREDICTED: GDSL esterase/lipase At5g62930 [Tarenaya hassleriana]
8 Hb_002609_200 0.0933614414 - - PREDICTED: anthranilate synthase alpha subunit 2, chloroplastic isoform X2 [Jatropha curcas]
9 Hb_002014_030 0.0934483216 - - hypothetical protein JCGZ_07251 [Jatropha curcas]
10 Hb_011457_050 0.0938239271 - - PREDICTED: TP53-regulating kinase [Jatropha curcas]
11 Hb_001575_060 0.0954121279 - - PREDICTED: 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase, mitochondrial-like [Jatropha curcas]
12 Hb_000072_200 0.0995942866 - - PREDICTED: myb-like protein X [Jatropha curcas]
13 Hb_002613_020 0.1005748367 - - ADP-ribose pyrophosphatase, putative [Ricinus communis]
14 Hb_000159_130 0.1019440477 - - RNA binding protein, putative [Ricinus communis]
15 Hb_003106_100 0.1035909143 - - mannose-1-phosphate guanyltransferase, putative [Ricinus communis]
16 Hb_000403_070 0.1051985065 - - PREDICTED: iron-sulfur assembly protein IscA, chloroplastic isoform X1 [Jatropha curcas]
17 Hb_003622_030 0.1076942193 - - PREDICTED: HAUS augmin-like complex subunit 1 [Jatropha curcas]
18 Hb_000035_480 0.1089353545 - - PREDICTED: probable protein phosphatase 2C 59 [Jatropha curcas]
19 Hb_021576_030 0.1094824382 - - PREDICTED: uncharacterized protein LOC105637542 [Jatropha curcas]
20 Hb_017987_030 0.109541173 - - PREDICTED: uncharacterized protein LOC105630796 [Jatropha curcas]

Gene co-expression network

sample Hb_000107_150 Hb_000107_150 Hb_007827_010 Hb_007827_010 Hb_000107_150--Hb_007827_010 Hb_001240_010 Hb_001240_010 Hb_000107_150--Hb_001240_010 Hb_002872_050 Hb_002872_050 Hb_000107_150--Hb_002872_050 Hb_001728_060 Hb_001728_060 Hb_000107_150--Hb_001728_060 Hb_003020_260 Hb_003020_260 Hb_000107_150--Hb_003020_260 Hb_014720_110 Hb_014720_110 Hb_000107_150--Hb_014720_110 Hb_002609_200 Hb_002609_200 Hb_007827_010--Hb_002609_200 Hb_001279_080 Hb_001279_080 Hb_007827_010--Hb_001279_080 Hb_007827_010--Hb_002872_050 Hb_000431_070 Hb_000431_070 Hb_007827_010--Hb_000431_070 Hb_000035_270 Hb_000035_270 Hb_007827_010--Hb_000035_270 Hb_000403_070 Hb_000403_070 Hb_001240_010--Hb_000403_070 Hb_001575_060 Hb_001575_060 Hb_001240_010--Hb_001575_060 Hb_003050_250 Hb_003050_250 Hb_001240_010--Hb_003050_250 Hb_140627_010 Hb_140627_010 Hb_001240_010--Hb_140627_010 Hb_011457_050 Hb_011457_050 Hb_001240_010--Hb_011457_050 Hb_003050_280 Hb_003050_280 Hb_002872_050--Hb_003050_280 Hb_000056_070 Hb_000056_070 Hb_002872_050--Hb_000056_070 Hb_001318_260 Hb_001318_260 Hb_002872_050--Hb_001318_260 Hb_011689_120 Hb_011689_120 Hb_002872_050--Hb_011689_120 Hb_000159_130 Hb_000159_130 Hb_001728_060--Hb_000159_130 Hb_000016_080 Hb_000016_080 Hb_001728_060--Hb_000016_080 Hb_001728_060--Hb_001575_060 Hb_001006_020 Hb_001006_020 Hb_001728_060--Hb_001006_020 Hb_001728_060--Hb_011457_050 Hb_018272_020 Hb_018272_020 Hb_003020_260--Hb_018272_020 Hb_000289_110 Hb_000289_110 Hb_003020_260--Hb_000289_110 Hb_002014_030 Hb_002014_030 Hb_003020_260--Hb_002014_030 Hb_001366_180 Hb_001366_180 Hb_003020_260--Hb_001366_180 Hb_025098_010 Hb_025098_010 Hb_003020_260--Hb_025098_010 Hb_006573_190 Hb_006573_190 Hb_014720_110--Hb_006573_190 Hb_003678_020 Hb_003678_020 Hb_014720_110--Hb_003678_020 Hb_001828_150 Hb_001828_150 Hb_014720_110--Hb_001828_150 Hb_004586_420 Hb_004586_420 Hb_014720_110--Hb_004586_420 Hb_000920_200 Hb_000920_200 Hb_014720_110--Hb_000920_200 Hb_003622_030 Hb_003622_030 Hb_014720_110--Hb_003622_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
27.9825 11.9615 52.8621 53.9911 24.9459 38.2661
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
58.3456 113.474 44.3685 61.0098 87.5246

CAGE analysis