Hb_000107_160

Information

Type -
Description -
Location Contig107: 117280-127245
Sequence    

Annotation

kegg
ID rcu:RCOM_1573120
description transcription factor, putative
nr
ID XP_012086614.1
description PREDICTED: uncharacterized protein LOC105645584 [Jatropha curcas]
swissprot
ID Q8C0I4
description Enhancer of polycomb homolog 2 OS=Mus musculus GN=Epc2 PE=2 SV=2
trembl
ID A0A067L8B0
description Enhancer of polycomb-like protein OS=Jatropha curcas GN=JCGZ_01191 PE=3 SV=1
Gene Ontology
ID GO:0032777
description enhancer of polycomb-like protein 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02150: 117333-127176 , PASA_asmbl_02151: 117470-126961 , PASA_asmbl_02153: 128043-128557
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000107_160 0.0 - - PREDICTED: uncharacterized protein LOC105645584 [Jatropha curcas]
2 Hb_012423_030 0.0574202485 - - PREDICTED: probable sodium/metabolite cotransporter BASS6, chloroplastic isoform X1 [Jatropha curcas]
3 Hb_012675_050 0.0658475716 - - conserved hypothetical protein [Ricinus communis]
4 Hb_008453_030 0.0663618784 - - Thioredoxin superfamily protein [Theobroma cacao]
5 Hb_004143_150 0.0690558402 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 24-like isoform X6 [Jatropha curcas]
6 Hb_002676_090 0.0716112397 - - PREDICTED: protein TIC 22-like, chloroplastic [Jatropha curcas]
7 Hb_004324_270 0.0792127678 - - PREDICTED: mitochondrial carrier protein MTM1 [Jatropha curcas]
8 Hb_000061_210 0.0803956611 transcription factor TF Family: Pseudo ARR-B PREDICTED: two-component response regulator-like APRR1 isoform X1 [Jatropha curcas]
9 Hb_000327_060 0.0811890266 - - PREDICTED: uncharacterized protein LOC105635258 isoform X2 [Jatropha curcas]
10 Hb_000059_370 0.0816620512 - - PREDICTED: U6 snRNA phosphodiesterase [Jatropha curcas]
11 Hb_002183_060 0.0823467003 transcription factor TF Family: C3H conserved hypothetical protein [Ricinus communis]
12 Hb_004127_020 0.0840147871 - - PREDICTED: probable RNA 3'-terminal phosphate cyclase-like protein isoform X1 [Populus euphratica]
13 Hb_001545_170 0.0845689925 - - PREDICTED: cleavage stimulating factor 64 isoform X1 [Jatropha curcas]
14 Hb_000046_050 0.0858618982 - - PREDICTED: LEC14B homolog [Jatropha curcas]
15 Hb_001828_060 0.0864025026 desease resistance Gene Name: AAA_31 nucleotide-binding protein, putative [Ricinus communis]
16 Hb_000479_090 0.087550392 - - PREDICTED: zinc finger RNA-binding protein [Jatropha curcas]
17 Hb_004899_370 0.0877629315 - - hypothetical protein CICLE_v10009013mg [Citrus clementina]
18 Hb_012490_070 0.0886108447 - - conserved hypothetical protein [Ricinus communis]
19 Hb_158445_010 0.0894164866 - - PREDICTED: cysteine protease ATG4-like isoform X1 [Jatropha curcas]
20 Hb_000384_100 0.0897222804 - - hydrolase, putative [Ricinus communis]

Gene co-expression network

sample Hb_000107_160 Hb_000107_160 Hb_012423_030 Hb_012423_030 Hb_000107_160--Hb_012423_030 Hb_012675_050 Hb_012675_050 Hb_000107_160--Hb_012675_050 Hb_008453_030 Hb_008453_030 Hb_000107_160--Hb_008453_030 Hb_004143_150 Hb_004143_150 Hb_000107_160--Hb_004143_150 Hb_002676_090 Hb_002676_090 Hb_000107_160--Hb_002676_090 Hb_004324_270 Hb_004324_270 Hb_000107_160--Hb_004324_270 Hb_012423_030--Hb_008453_030 Hb_000327_060 Hb_000327_060 Hb_012423_030--Hb_000327_060 Hb_012423_030--Hb_004324_270 Hb_029879_130 Hb_029879_130 Hb_012423_030--Hb_029879_130 Hb_012423_030--Hb_012675_050 Hb_011909_100 Hb_011909_100 Hb_012675_050--Hb_011909_100 Hb_000061_210 Hb_000061_210 Hb_012675_050--Hb_000061_210 Hb_000046_050 Hb_000046_050 Hb_012675_050--Hb_000046_050 Hb_103118_010 Hb_103118_010 Hb_012675_050--Hb_103118_010 Hb_002408_020 Hb_002408_020 Hb_012675_050--Hb_002408_020 Hb_004934_100 Hb_004934_100 Hb_008453_030--Hb_004934_100 Hb_000421_220 Hb_000421_220 Hb_008453_030--Hb_000421_220 Hb_008453_030--Hb_000061_210 Hb_000373_070 Hb_000373_070 Hb_008453_030--Hb_000373_070 Hb_000081_160 Hb_000081_160 Hb_008453_030--Hb_000081_160 Hb_004899_370 Hb_004899_370 Hb_004143_150--Hb_004899_370 Hb_000001_060 Hb_000001_060 Hb_004143_150--Hb_000001_060 Hb_000920_110 Hb_000920_110 Hb_004143_150--Hb_000920_110 Hb_004127_020 Hb_004127_020 Hb_004143_150--Hb_004127_020 Hb_006615_240 Hb_006615_240 Hb_004143_150--Hb_006615_240 Hb_004102_110 Hb_004102_110 Hb_004143_150--Hb_004102_110 Hb_004567_120 Hb_004567_120 Hb_002676_090--Hb_004567_120 Hb_005568_120 Hb_005568_120 Hb_002676_090--Hb_005568_120 Hb_002676_090--Hb_004143_150 Hb_002676_090--Hb_004899_370 Hb_001545_170 Hb_001545_170 Hb_002676_090--Hb_001545_170 Hb_011457_050 Hb_011457_050 Hb_004324_270--Hb_011457_050 Hb_004324_270--Hb_000046_050 Hb_005446_010 Hb_005446_010 Hb_004324_270--Hb_005446_010 Hb_004324_270--Hb_002408_020 Hb_003768_030 Hb_003768_030 Hb_004324_270--Hb_003768_030 Hb_002183_060 Hb_002183_060 Hb_004324_270--Hb_002183_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.74385 11.8123 9.78796 11.4554 13.4078 13.8205
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
23.0851 32.9721 19.7014 12.9972 17.2069

CAGE analysis