Hb_000107_200

Information

Type -
Description -
Location Contig107: 142593-149096
Sequence    

Annotation

kegg
ID dosa:Os08t0539600-01
description Os08g0539600; Similar to Ankyrin repeat domain-containing protein 2.
nr
ID KJB31932.1
description hypothetical protein B456_005G214800 [Gossypium raimondii]
swissprot
ID -
description -
trembl
ID A0A0D2NGJ3
description Gossypium raimondii chromosome 5, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_005G214800 PE=4 SV=1
Gene Ontology
ID GO:0016740
description ankyrin repeat domain-containing protein 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02158: 142387-169314 , PASA_asmbl_02159: 142407-169349 , PASA_asmbl_02161: 142503-143146
cDNA
(Sanger)
(ID:Location)		 015_F08.ab1: 142387-160358

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000107_200 0.0 - - hypothetical protein B456_005G214800 [Gossypium raimondii]
2 Hb_001018_130 0.0765128055 - - PREDICTED: uncharacterized protein LOC105638260 [Jatropha curcas]
3 Hb_008120_010 0.0806390835 - - PREDICTED: polyadenylate-binding protein-interacting protein 9-like [Populus euphratica]
4 Hb_002445_120 0.0819977469 - - secretory carrier membrane protein, putative [Ricinus communis]
5 Hb_002067_120 0.0823760573 - - PREDICTED: uncharacterized protein LOC105111554 isoform X1 [Populus euphratica]
6 Hb_000606_090 0.0846094006 - - Far upstream element-binding protein, putative [Ricinus communis]
7 Hb_001135_060 0.085937967 - - PREDICTED: probable protein phosphatase 2C 38 [Jatropha curcas]
8 Hb_032050_040 0.0912565393 - - PREDICTED: protein S-acyltransferase 8-like [Jatropha curcas]
9 Hb_000212_240 0.0912768968 - - short-chain dehydrogenase, putative [Ricinus communis]
10 Hb_144598_030 0.0933293709 - - PREDICTED: mitotic apparatus protein p62 [Jatropha curcas]
11 Hb_002671_100 0.0939817243 - - PREDICTED: tRNA (guanine-N(7)-)-methyltransferase-like [Jatropha curcas]
12 Hb_000146_050 0.0946194384 - - PREDICTED: protein unc-50 homolog isoform X2 [Gossypium raimondii]
13 Hb_004934_070 0.0950822505 - - PREDICTED: U2 small nuclear ribonucleoprotein A' [Jatropha curcas]
14 Hb_005023_030 0.0974452056 - - PREDICTED: uncharacterized protein LOC103417254 [Malus domestica]
15 Hb_020665_040 0.09775861 transcription factor TF Family: Jumonji PREDICTED: trichohyalin-like [Malus domestica]
16 Hb_002716_130 0.0979969542 - - PREDICTED: uncharacterized protein LOC105645470 isoform X2 [Jatropha curcas]
17 Hb_004117_160 0.100296365 transcription factor TF Family: B3 B3 domain-containing transcription repressor VAL2 -like protein [Gossypium arboreum]
18 Hb_005023_010 0.1006052372 - - PREDICTED: putative lipase ROG1 [Jatropha curcas]
19 Hb_004881_020 0.1006082264 - - PREDICTED: serine/threonine-protein kinase rio2-like [Jatropha curcas]
20 Hb_012322_020 0.1018903845 - - -

Gene co-expression network

sample Hb_000107_200 Hb_000107_200 Hb_001018_130 Hb_001018_130 Hb_000107_200--Hb_001018_130 Hb_008120_010 Hb_008120_010 Hb_000107_200--Hb_008120_010 Hb_002445_120 Hb_002445_120 Hb_000107_200--Hb_002445_120 Hb_002067_120 Hb_002067_120 Hb_000107_200--Hb_002067_120 Hb_000606_090 Hb_000606_090 Hb_000107_200--Hb_000606_090 Hb_001135_060 Hb_001135_060 Hb_000107_200--Hb_001135_060 Hb_005023_010 Hb_005023_010 Hb_001018_130--Hb_005023_010 Hb_032050_040 Hb_032050_040 Hb_001018_130--Hb_032050_040 Hb_000146_050 Hb_000146_050 Hb_001018_130--Hb_000146_050 Hb_001018_110 Hb_001018_110 Hb_001018_130--Hb_001018_110 Hb_001018_130--Hb_002445_120 Hb_011671_040 Hb_011671_040 Hb_008120_010--Hb_011671_040 Hb_009049_020 Hb_009049_020 Hb_008120_010--Hb_009049_020 Hb_002828_020 Hb_002828_020 Hb_008120_010--Hb_002828_020 Hb_008120_010--Hb_002445_120 Hb_007403_060 Hb_007403_060 Hb_008120_010--Hb_007403_060 Hb_003777_310 Hb_003777_310 Hb_002445_120--Hb_003777_310 Hb_000318_290 Hb_000318_290 Hb_002445_120--Hb_000318_290 Hb_000056_260 Hb_000056_260 Hb_002445_120--Hb_000056_260 Hb_001633_130 Hb_001633_130 Hb_002445_120--Hb_001633_130 Hb_044736_010 Hb_044736_010 Hb_002445_120--Hb_044736_010 Hb_012023_020 Hb_012023_020 Hb_002067_120--Hb_012023_020 Hb_010565_010 Hb_010565_010 Hb_002067_120--Hb_010565_010 Hb_006951_020 Hb_006951_020 Hb_002067_120--Hb_006951_020 Hb_126295_010 Hb_126295_010 Hb_002067_120--Hb_126295_010 Hb_000606_080 Hb_000606_080 Hb_002067_120--Hb_000606_080 Hb_000606_090--Hb_001135_060 Hb_000212_240 Hb_000212_240 Hb_000606_090--Hb_000212_240 Hb_000494_040 Hb_000494_040 Hb_000606_090--Hb_000494_040 Hb_003665_060 Hb_003665_060 Hb_000606_090--Hb_003665_060 Hb_001444_010 Hb_001444_010 Hb_000606_090--Hb_001444_010 Hb_000025_110 Hb_000025_110 Hb_000606_090--Hb_000025_110 Hb_033642_030 Hb_033642_030 Hb_001135_060--Hb_033642_030 Hb_001135_060--Hb_000494_040 Hb_001135_060--Hb_032050_040 Hb_002716_130 Hb_002716_130 Hb_001135_060--Hb_002716_130 Hb_001135_060--Hb_003665_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.39052 5.3404 5.60116 13.9156 9.07002 18.1121
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.1197 7.74825 6.56863 5.17069 6.01068

CAGE analysis