Hb_000107_230

Information

Type -
Description -
Location Contig107: 168462-169279
Sequence    

Annotation

kegg
ID egr:104428876
description ankyrin repeat domain-containing protein 2-like
nr
ID AFK36388.1
description unknown [Medicago truncatula]
swissprot
ID Q5ZLC8
description Serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit C OS=Gallus gallus GN=ANKRD52 PE=2 SV=1
trembl
ID I3S7Z6
description Uncharacterized protein OS=Medicago truncatula PE=2 SV=1
Gene Ontology
ID GO:0005515
description ankyrin repeat domain-containing protein 2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02158: 142387-169314 , PASA_asmbl_02159: 142407-169349
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000107_230 0.0 - - unknown [Medicago truncatula]
2 Hb_000207_150 0.0596260391 - - PREDICTED: uncharacterized membrane protein At4g09580 [Jatropha curcas]
3 Hb_004157_100 0.0682404816 - - PREDICTED: putative nuclease HARBI1 [Jatropha curcas]
4 Hb_007831_010 0.0715904798 - - PREDICTED: oligoribonuclease [Vitis vinifera]
5 Hb_006588_170 0.0723746057 - - PREDICTED: OTU domain-containing protein At3g57810 [Jatropha curcas]
6 Hb_000594_050 0.0737868802 - - PREDICTED: pH-response regulator protein palA/RIM20 isoform X1 [Jatropha curcas]
7 Hb_003929_170 0.0771272171 - - PREDICTED: novel plant SNARE 13 [Jatropha curcas]
8 Hb_000331_090 0.0779255184 - - hypothetical protein PRUPE_ppa010923mg [Prunus persica]
9 Hb_001269_330 0.0808397555 - - PREDICTED: uncharacterized protein LOC105645377 [Jatropha curcas]
10 Hb_006153_070 0.0833200859 - - 3-oxoacyl-[acyl-carrier-protein] synthase 3 A, chloroplastic [Jatropha curcas]
11 Hb_000256_150 0.0837808993 - - PREDICTED: trafficking protein particle complex II-specific subunit 120 homolog [Jatropha curcas]
12 Hb_000617_010 0.0851373881 - - hypothetical protein JCGZ_23296 [Jatropha curcas]
13 Hb_008970_030 0.0856590963 - - arf gtpase-activating protein, putative [Ricinus communis]
14 Hb_001232_190 0.085855406 - - PREDICTED: uncharacterized protein LOC105639761 isoform X2 [Jatropha curcas]
15 Hb_001635_160 0.0870729387 - - hypothetical protein JCGZ_24810 [Jatropha curcas]
16 Hb_019280_030 0.0897344598 - - -
17 Hb_000058_130 0.0897606415 - - PREDICTED: uncharacterized protein LOC105640884 [Jatropha curcas]
18 Hb_030736_020 0.0897701151 - - conserved hypothetical protein [Ricinus communis]
19 Hb_012322_020 0.0898529601 - - -
20 Hb_004452_110 0.0912667591 - - PREDICTED: uncharacterized protein LOC105639575 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000107_230 Hb_000107_230 Hb_000207_150 Hb_000207_150 Hb_000107_230--Hb_000207_150 Hb_004157_100 Hb_004157_100 Hb_000107_230--Hb_004157_100 Hb_007831_010 Hb_007831_010 Hb_000107_230--Hb_007831_010 Hb_006588_170 Hb_006588_170 Hb_000107_230--Hb_006588_170 Hb_000594_050 Hb_000594_050 Hb_000107_230--Hb_000594_050 Hb_003929_170 Hb_003929_170 Hb_000107_230--Hb_003929_170 Hb_000058_130 Hb_000058_130 Hb_000207_150--Hb_000058_130 Hb_000331_090 Hb_000331_090 Hb_000207_150--Hb_000331_090 Hb_000207_150--Hb_007831_010 Hb_000207_150--Hb_003929_170 Hb_000579_120 Hb_000579_120 Hb_000207_150--Hb_000579_120 Hb_054745_010 Hb_054745_010 Hb_004157_100--Hb_054745_010 Hb_169631_010 Hb_169631_010 Hb_004157_100--Hb_169631_010 Hb_000676_080 Hb_000676_080 Hb_004157_100--Hb_000676_080 Hb_000004_020 Hb_000004_020 Hb_004157_100--Hb_000004_020 Hb_000022_020 Hb_000022_020 Hb_004157_100--Hb_000022_020 Hb_006153_070 Hb_006153_070 Hb_007831_010--Hb_006153_070 Hb_003430_050 Hb_003430_050 Hb_007831_010--Hb_003430_050 Hb_015807_050 Hb_015807_050 Hb_007831_010--Hb_015807_050 Hb_007831_010--Hb_006588_170 Hb_105328_020 Hb_105328_020 Hb_006588_170--Hb_105328_020 Hb_013399_020 Hb_013399_020 Hb_006588_170--Hb_013399_020 Hb_000170_090 Hb_000170_090 Hb_006588_170--Hb_000170_090 Hb_000345_380 Hb_000345_380 Hb_006588_170--Hb_000345_380 Hb_001860_030 Hb_001860_030 Hb_006588_170--Hb_001860_030 Hb_000181_130 Hb_000181_130 Hb_000594_050--Hb_000181_130 Hb_003750_050 Hb_003750_050 Hb_000594_050--Hb_003750_050 Hb_000594_050--Hb_006588_170 Hb_002811_180 Hb_002811_180 Hb_000594_050--Hb_002811_180 Hb_002641_060 Hb_002641_060 Hb_000594_050--Hb_002641_060 Hb_001087_030 Hb_001087_030 Hb_003929_170--Hb_001087_030 Hb_000046_570 Hb_000046_570 Hb_003929_170--Hb_000046_570 Hb_000009_400 Hb_000009_400 Hb_003929_170--Hb_000009_400 Hb_000390_250 Hb_000390_250 Hb_003929_170--Hb_000390_250
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
131.638 99.3366 170.329 254.788 105.62 211.538
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
133.33 146.73 116.073 110.44 133.153

CAGE analysis