Hb_000107_250

Information

Type -
Description -
Location Contig107: 172687-178559
Sequence    

Annotation

kegg
ID rcu:RCOM_1563600
description voltage-gated clc-type chloride channel, putative
nr
ID XP_002514381.1
description voltage-gated clc-type chloride channel, putative [Ricinus communis]
swissprot
ID Q8GX93
description Chloride channel protein CLC-e OS=Arabidopsis thaliana GN=CLC-E PE=2 SV=2
trembl
ID A0A022QP18
description Chloride channel protein OS=Erythranthe guttata GN=MIMGU_mgv1a002342mg PE=3 SV=1
Gene Ontology
ID GO:0016020
description chloride channel protein clc-e isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02162: 171368-172290 , PASA_asmbl_02163: 171675-172290 , PASA_asmbl_02164: 172839-173324 , PASA_asmbl_02165: 173384-180533 , PASA_asmbl_02166: 173384-173957 , PASA_asmbl_02167: 173435-173590
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000107_250 0.0 - - voltage-gated clc-type chloride channel, putative [Ricinus communis]
2 Hb_000000_310 0.0717016784 - - metalloendopeptidase, putative [Ricinus communis]
3 Hb_073973_120 0.0805621509 - - zinc finger protein, putative [Ricinus communis]
4 Hb_022693_130 0.0807950686 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
5 Hb_002053_050 0.084286063 - - Kinesin heavy chain, putative [Ricinus communis]
6 Hb_003682_070 0.0896592683 - - PREDICTED: uncharacterized protein LOC105633817 isoform X1 [Jatropha curcas]
7 Hb_004705_160 0.0923160162 - - PREDICTED: protein MEI2-like 4 [Jatropha curcas]
8 Hb_010620_050 0.0925684085 - - PREDICTED: uncharacterized protein LOC105646119 [Jatropha curcas]
9 Hb_005062_060 0.0927318997 - - PREDICTED: uncharacterized protein At4g06598-like [Jatropha curcas]
10 Hb_006916_050 0.095846874 - - PREDICTED: ultraviolet-B receptor UVR8 [Jatropha curcas]
11 Hb_000684_390 0.0986834781 - - PREDICTED: mediator of RNA polymerase II transcription subunit 4 [Jatropha curcas]
12 Hb_002249_080 0.099028942 - - lysosomal alpha-mannosidase, putative [Ricinus communis]
13 Hb_000922_060 0.1006946335 - - kinesin light chain, putative [Ricinus communis]
14 Hb_026549_070 0.1026659595 - - PREDICTED: UDP-glucuronic acid decarboxylase 1 [Jatropha curcas]
15 Hb_000300_510 0.1031174795 - - PREDICTED: uncharacterized protein LOC105632605 [Jatropha curcas]
16 Hb_000388_150 0.1048322845 - - hypothetical protein JCGZ_21651 [Jatropha curcas]
17 Hb_000140_340 0.1053634365 - - PREDICTED: protein ABIL1 [Jatropha curcas]
18 Hb_002942_230 0.1062289331 - - PREDICTED: long chain base biosynthesis protein 2a [Populus euphratica]
19 Hb_003847_040 0.1064557452 - - adenosine diphosphatase, putative [Ricinus communis]
20 Hb_138585_030 0.1074693761 - - PREDICTED: probable serine/threonine-protein kinase At1g54610 [Jatropha curcas]

Gene co-expression network

sample Hb_000107_250 Hb_000107_250 Hb_000000_310 Hb_000000_310 Hb_000107_250--Hb_000000_310 Hb_073973_120 Hb_073973_120 Hb_000107_250--Hb_073973_120 Hb_022693_130 Hb_022693_130 Hb_000107_250--Hb_022693_130 Hb_002053_050 Hb_002053_050 Hb_000107_250--Hb_002053_050 Hb_003682_070 Hb_003682_070 Hb_000107_250--Hb_003682_070 Hb_004705_160 Hb_004705_160 Hb_000107_250--Hb_004705_160 Hb_000000_310--Hb_003682_070 Hb_000300_510 Hb_000300_510 Hb_000000_310--Hb_000300_510 Hb_000684_390 Hb_000684_390 Hb_000000_310--Hb_000684_390 Hb_000120_860 Hb_000120_860 Hb_000000_310--Hb_000120_860 Hb_000922_060 Hb_000922_060 Hb_000000_310--Hb_000922_060 Hb_174865_040 Hb_174865_040 Hb_073973_120--Hb_174865_040 Hb_073973_120--Hb_022693_130 Hb_073973_120--Hb_002053_050 Hb_006006_060 Hb_006006_060 Hb_073973_120--Hb_006006_060 Hb_005062_060 Hb_005062_060 Hb_073973_120--Hb_005062_060 Hb_160271_010 Hb_160271_010 Hb_022693_130--Hb_160271_010 Hb_022693_130--Hb_005062_060 Hb_068079_010 Hb_068079_010 Hb_022693_130--Hb_068079_010 Hb_000645_180 Hb_000645_180 Hb_022693_130--Hb_000645_180 Hb_000108_020 Hb_000108_020 Hb_022693_130--Hb_000108_020 Hb_002053_050--Hb_005062_060 Hb_005656_070 Hb_005656_070 Hb_002053_050--Hb_005656_070 Hb_002053_050--Hb_022693_130 Hb_000815_230 Hb_000815_230 Hb_002053_050--Hb_000815_230 Hb_003682_070--Hb_000922_060 Hb_003682_070--Hb_000300_510 Hb_003682_070--Hb_000120_860 Hb_004735_020 Hb_004735_020 Hb_003682_070--Hb_004735_020 Hb_000862_100 Hb_000862_100 Hb_004705_160--Hb_000862_100 Hb_138585_030 Hb_138585_030 Hb_004705_160--Hb_138585_030 Hb_000208_190 Hb_000208_190 Hb_004705_160--Hb_000208_190 Hb_000748_090 Hb_000748_090 Hb_004705_160--Hb_000748_090 Hb_004705_160--Hb_068079_010 Hb_000788_030 Hb_000788_030 Hb_004705_160--Hb_000788_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.33958 4.09603 7.60251 9.69536 3.03918 3.0037
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.4479 2.35698 2.34049 2.74531 11.9626

CAGE analysis