Hb_000107_260

Information

Type -
Description -
Location Contig107: 179992-180478
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02165: 173384-180533
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000107_260 0.0 - - -
2 Hb_000977_200 0.1480358395 - - PREDICTED: acyl-[acyl-carrier-protein] desaturase, chloroplastic-like [Jatropha curcas]
3 Hb_000816_190 0.200817163 - - conserved hypothetical protein [Ricinus communis]
4 Hb_001514_250 0.2029678908 - - GAST1 protein precursor, putative [Ricinus communis]
5 Hb_008119_030 0.2095988761 - - PREDICTED: peroxidase 63-like [Jatropha curcas]
6 Hb_000191_140 0.2156790457 - - PREDICTED: growth-regulating factor 1-like isoform X2 [Jatropha curcas]
7 Hb_118939_010 0.2176145981 - - protein binding protein, putative [Ricinus communis]
8 Hb_001269_090 0.2205681166 - - H(\+)-transporting atpase plant/fungi plasma membrane type, putative [Ricinus communis]
9 Hb_012286_060 0.2211541574 transcription factor TF Family: SET unnamed protein product [Vitis vinifera]
10 Hb_007163_050 0.221394177 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA9 [Jatropha curcas]
11 Hb_005348_150 0.2227528316 - - PREDICTED: actin-100-like [Jatropha curcas]
12 Hb_001391_050 0.2296630555 - - PREDICTED: probable carboxylesterase 18 [Jatropha curcas]
13 Hb_000532_150 0.2325775404 - - glutathione-s-transferase theta, gst, putative [Ricinus communis]
14 Hb_000635_020 0.2332610466 - - conserved hypothetical protein [Ricinus communis]
15 Hb_009808_010 0.2358868979 - - Leucine-rich repeat protein kinase family protein isoform 1 [Theobroma cacao]
16 Hb_107658_010 0.2389052382 - - PREDICTED: BTB/POZ domain-containing protein At1g03010-like isoform X2 [Jatropha curcas]
17 Hb_093385_010 0.2403501297 - - PREDICTED: probable mannitol dehydrogenase [Pyrus x bretschneideri]
18 Hb_066531_010 0.2418853875 - - ccd1, putative [Ricinus communis]
19 Hb_002164_010 0.2418960932 - - Stellacyanin, putative [Ricinus communis]
20 Hb_003992_280 0.2420167195 - - PREDICTED: uncharacterized protein LOC105117987 [Populus euphratica]

Gene co-expression network

sample Hb_000107_260 Hb_000107_260 Hb_000977_200 Hb_000977_200 Hb_000107_260--Hb_000977_200 Hb_000816_190 Hb_000816_190 Hb_000107_260--Hb_000816_190 Hb_001514_250 Hb_001514_250 Hb_000107_260--Hb_001514_250 Hb_008119_030 Hb_008119_030 Hb_000107_260--Hb_008119_030 Hb_000191_140 Hb_000191_140 Hb_000107_260--Hb_000191_140 Hb_118939_010 Hb_118939_010 Hb_000107_260--Hb_118939_010 Hb_003086_160 Hb_003086_160 Hb_000977_200--Hb_003086_160 Hb_012286_060 Hb_012286_060 Hb_000977_200--Hb_012286_060 Hb_014705_010 Hb_014705_010 Hb_000977_200--Hb_014705_010 Hb_000977_200--Hb_000191_140 Hb_000977_200--Hb_000816_190 Hb_002490_030 Hb_002490_030 Hb_000816_190--Hb_002490_030 Hb_002900_100 Hb_002900_100 Hb_000816_190--Hb_002900_100 Hb_066514_010 Hb_066514_010 Hb_000816_190--Hb_066514_010 Hb_000816_190--Hb_008119_030 Hb_001366_170 Hb_001366_170 Hb_000816_190--Hb_001366_170 Hb_011918_010 Hb_011918_010 Hb_000816_190--Hb_011918_010 Hb_000532_150 Hb_000532_150 Hb_001514_250--Hb_000532_150 Hb_007163_050 Hb_007163_050 Hb_001514_250--Hb_007163_050 Hb_000139_050 Hb_000139_050 Hb_001514_250--Hb_000139_050 Hb_062226_150 Hb_062226_150 Hb_001514_250--Hb_062226_150 Hb_002026_050 Hb_002026_050 Hb_001514_250--Hb_002026_050 Hb_000300_190 Hb_000300_190 Hb_001514_250--Hb_000300_190 Hb_003605_040 Hb_003605_040 Hb_008119_030--Hb_003605_040 Hb_009808_010 Hb_009808_010 Hb_008119_030--Hb_009808_010 Hb_002026_020 Hb_002026_020 Hb_008119_030--Hb_002026_020 Hb_009222_070 Hb_009222_070 Hb_008119_030--Hb_009222_070 Hb_018133_100 Hb_018133_100 Hb_008119_030--Hb_018133_100 Hb_071781_010 Hb_071781_010 Hb_008119_030--Hb_071781_010 Hb_118283_010 Hb_118283_010 Hb_000191_140--Hb_118283_010 Hb_001195_130 Hb_001195_130 Hb_000191_140--Hb_001195_130 Hb_005144_170 Hb_005144_170 Hb_000191_140--Hb_005144_170 Hb_017439_010 Hb_017439_010 Hb_000191_140--Hb_017439_010 Hb_000191_140--Hb_012286_060 Hb_000932_050 Hb_000932_050 Hb_000191_140--Hb_000932_050 Hb_118939_010--Hb_012286_060 Hb_005348_150 Hb_005348_150 Hb_118939_010--Hb_005348_150 Hb_007044_090 Hb_007044_090 Hb_118939_010--Hb_007044_090 Hb_001579_300 Hb_001579_300 Hb_118939_010--Hb_001579_300 Hb_006925_050 Hb_006925_050 Hb_118939_010--Hb_006925_050 Hb_007483_060 Hb_007483_060 Hb_118939_010--Hb_007483_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.96347 3.136 10.6707 18.826 0.838788 0.327248
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.21419 0.638112 0.446311 0 0.967474

CAGE analysis