Hb_000107_300

Information

Type -
Description -
Location Contig107: 227312-229454
Sequence    

Annotation

kegg
ID vvi:100257590
description AP-1 complex subunit sigma-1-like
nr
ID XP_012076749.1
description PREDICTED: AP-1 complex subunit sigma-2 [Jatropha curcas]
swissprot
ID O23685
description AP-1 complex subunit sigma-2 OS=Arabidopsis thaliana GN=AAP19-2 PE=2 SV=1
trembl
ID A0A067LR17
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10776 PE=4 SV=1
Gene Ontology
ID GO:0030117
description ap-1 complex subunit sigma-2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02171: 227242-229550 , PASA_asmbl_02172: 228612-229568
cDNA
(Sanger)
(ID:Location)		 053_D20.ab1: 228703-229568

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000107_300 0.0 - - PREDICTED: AP-1 complex subunit sigma-2 [Jatropha curcas]
2 Hb_000215_330 0.0583254693 - - PREDICTED: AP-4 complex subunit sigma [Jatropha curcas]
3 Hb_002314_010 0.0659864416 - - hypothetical protein JCGZ_15712 [Jatropha curcas]
4 Hb_003376_190 0.0681749515 - - syntaxin, putative [Ricinus communis]
5 Hb_002303_060 0.0722354079 - - conserved hypothetical protein [Ricinus communis]
6 Hb_005306_070 0.0847340549 - - PREDICTED: coatomer subunit zeta-1-like [Jatropha curcas]
7 Hb_000826_100 0.0866228943 - - PREDICTED: biogenesis of lysosome-related organelles complex 1 subunit 1 [Jatropha curcas]
8 Hb_005269_080 0.0877581904 - - protein with unknown function [Ricinus communis]
9 Hb_000189_240 0.0897543735 - - PREDICTED: PITH domain-containing protein At3g04780 [Jatropha curcas]
10 Hb_000638_170 0.0911128646 - - PREDICTED: ras-related protein RABC1 [Jatropha curcas]
11 Hb_002324_010 0.0911323358 - - PREDICTED: proteasome subunit alpha type-7 [Jatropha curcas]
12 Hb_006915_040 0.0938299209 - - PREDICTED: prefoldin subunit 6 [Eucalyptus grandis]
13 Hb_003605_160 0.0963555071 - - PREDICTED: uncharacterized protein LOC105135144 [Populus euphratica]
14 Hb_003494_050 0.0986901815 - - hypothetical protein PRUPE_ppa013459mg [Prunus persica]
15 Hb_001053_140 0.1017053351 - - PREDICTED: ATP synthase subunit O, mitochondrial [Jatropha curcas]
16 Hb_000701_100 0.1017668457 - - PREDICTED: ribose-phosphate pyrophosphokinase 1 [Jatropha curcas]
17 Hb_000087_130 0.1029327072 - - PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial [Jatropha curcas]
18 Hb_012340_050 0.1046340459 - - PREDICTED: actin-related protein 5 [Jatropha curcas]
19 Hb_000084_260 0.1052498894 - - PREDICTED: replication protein A 14 kDa subunit A-like [Jatropha curcas]
20 Hb_000005_090 0.1055791295 - - hypothetical protein CICLE_v10029644mg [Citrus clementina]

Gene co-expression network

sample Hb_000107_300 Hb_000107_300 Hb_000215_330 Hb_000215_330 Hb_000107_300--Hb_000215_330 Hb_002314_010 Hb_002314_010 Hb_000107_300--Hb_002314_010 Hb_003376_190 Hb_003376_190 Hb_000107_300--Hb_003376_190 Hb_002303_060 Hb_002303_060 Hb_000107_300--Hb_002303_060 Hb_005306_070 Hb_005306_070 Hb_000107_300--Hb_005306_070 Hb_000826_100 Hb_000826_100 Hb_000107_300--Hb_000826_100 Hb_000215_330--Hb_005306_070 Hb_000215_330--Hb_002314_010 Hb_000215_330--Hb_003376_190 Hb_003494_050 Hb_003494_050 Hb_000215_330--Hb_003494_050 Hb_000215_330--Hb_002303_060 Hb_002314_010--Hb_002303_060 Hb_002314_010--Hb_005306_070 Hb_001053_140 Hb_001053_140 Hb_002314_010--Hb_001053_140 Hb_003605_160 Hb_003605_160 Hb_002314_010--Hb_003605_160 Hb_002324_010 Hb_002324_010 Hb_003376_190--Hb_002324_010 Hb_005235_030 Hb_005235_030 Hb_003376_190--Hb_005235_030 Hb_005269_080 Hb_005269_080 Hb_003376_190--Hb_005269_080 Hb_006915_040 Hb_006915_040 Hb_003376_190--Hb_006915_040 Hb_002303_060--Hb_005269_080 Hb_002303_060--Hb_001053_140 Hb_000189_240 Hb_000189_240 Hb_002303_060--Hb_000189_240 Hb_002303_060--Hb_003605_160 Hb_000739_140 Hb_000739_140 Hb_005306_070--Hb_000739_140 Hb_001410_060 Hb_001410_060 Hb_005306_070--Hb_001410_060 Hb_005306_070--Hb_003494_050 Hb_005306_070--Hb_005269_080 Hb_000826_100--Hb_003605_160 Hb_000826_100--Hb_000189_240 Hb_007441_330 Hb_007441_330 Hb_000826_100--Hb_007441_330 Hb_008071_020 Hb_008071_020 Hb_000826_100--Hb_008071_020 Hb_026314_020 Hb_026314_020 Hb_000826_100--Hb_026314_020 Hb_026053_020 Hb_026053_020 Hb_000826_100--Hb_026053_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
33.5715 15.6324 40.3166 98.6897 23.7641 35.3577
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
67.7813 152.554 59.3349 30.7173 30.4493

CAGE analysis