Hb_000107_310

Information

Type -
Description -
Location Contig107: 230699-239966
Sequence    

Annotation

kegg
ID pop:POPTR_0001s26090g
description POPTRDRAFT_1067864; hypothetical protein
nr
ID XP_012065478.1
description PREDICTED: pseudouridine-metabolizing bifunctional protein C1861.05 [Jatropha curcas]
swissprot
ID C0ZIY1
description Pseudouridine-5'-phosphate glycosidase OS=Brevibacillus brevis (strain 47 / JCM 6285 / NBRC 100599) GN=psuG PE=3 SV=1
trembl
ID A0A067L5E0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22951 PE=3 SV=1
Gene Ontology
ID GO:0016798
description pseudouridine-metabolizing bifunctional protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02173: 235340-239971 , PASA_asmbl_02174: 231030-234852 , PASA_asmbl_02175: 231958-239901
cDNA
(Sanger)
(ID:Location)		 053_O19.ab1: 235340-236652

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000107_310 0.0 - - PREDICTED: pseudouridine-metabolizing bifunctional protein C1861.05 [Jatropha curcas]
2 Hb_003125_010 0.0744711514 - - PREDICTED: uncharacterized protein LOC105640205 [Jatropha curcas]
3 Hb_003092_030 0.0814200762 - - PREDICTED: calmodulin-binding receptor-like cytoplasmic kinase 3 [Jatropha curcas]
4 Hb_006198_080 0.0858113143 - - hypothetical protein MIMGU_mgv1a013452mg [Erythranthe guttata]
5 Hb_000656_110 0.087538703 - - nucleolysin tia-1, putative [Ricinus communis]
6 Hb_002759_060 0.0878474452 - - PREDICTED: protein LSM12 homolog A-like [Jatropha curcas]
7 Hb_180301_010 0.0908139445 - - PREDICTED: uncharacterized protein LOC105647918 isoform X1 [Jatropha curcas]
8 Hb_037887_010 0.0908834307 - - Charged multivesicular body protein 2a, putative [Ricinus communis]
9 Hb_000692_220 0.0912326748 - - hypothetical protein B456_002G120900 [Gossypium raimondii]
10 Hb_000041_050 0.093169655 - - PREDICTED: STE20/SPS1-related proline-alanine-rich protein kinase [Jatropha curcas]
11 Hb_000898_050 0.0935090213 - - -
12 Hb_002477_330 0.0941325208 - - PREDICTED: glycylpeptide N-tetradecanoyltransferase 1-like [Jatropha curcas]
13 Hb_000024_080 0.0946316672 - - PREDICTED: probable complex I intermediate-associated protein 30 isoform X2 [Jatropha curcas]
14 Hb_010504_020 0.0949799893 - - PREDICTED: calmodulin-7 isoform X1 [Vitis vinifera]
15 Hb_000700_110 0.0952614052 - - Vesicle-associated membrane protein, putative [Ricinus communis]
16 Hb_001114_130 0.0975579643 transcription factor TF Family: MIKC PREDICTED: MADS-box protein SVP-like isoform X1 [Jatropha curcas]
17 Hb_000479_190 0.0979397678 - - conserved hypothetical protein [Ricinus communis]
18 Hb_004218_110 0.0992136805 - - hypothetical protein PRUPE_ppa006329mg [Prunus persica]
19 Hb_012799_160 0.0994782988 - - PREDICTED: ADP-ribosylation factor-related protein 1-like [Jatropha curcas]
20 Hb_001205_150 0.099687114 - - Uncharacterized protein TCM_000403 [Theobroma cacao]

Gene co-expression network

sample Hb_000107_310 Hb_000107_310 Hb_003125_010 Hb_003125_010 Hb_000107_310--Hb_003125_010 Hb_003092_030 Hb_003092_030 Hb_000107_310--Hb_003092_030 Hb_006198_080 Hb_006198_080 Hb_000107_310--Hb_006198_080 Hb_000656_110 Hb_000656_110 Hb_000107_310--Hb_000656_110 Hb_002759_060 Hb_002759_060 Hb_000107_310--Hb_002759_060 Hb_180301_010 Hb_180301_010 Hb_000107_310--Hb_180301_010 Hb_001369_690 Hb_001369_690 Hb_003125_010--Hb_001369_690 Hb_010504_020 Hb_010504_020 Hb_003125_010--Hb_010504_020 Hb_012799_160 Hb_012799_160 Hb_003125_010--Hb_012799_160 Hb_002473_130 Hb_002473_130 Hb_003125_010--Hb_002473_130 Hb_172426_040 Hb_172426_040 Hb_003125_010--Hb_172426_040 Hb_025240_040 Hb_025240_040 Hb_003125_010--Hb_025240_040 Hb_003092_030--Hb_006198_080 Hb_000700_110 Hb_000700_110 Hb_003092_030--Hb_000700_110 Hb_021238_050 Hb_021238_050 Hb_003092_030--Hb_021238_050 Hb_037887_010 Hb_037887_010 Hb_003092_030--Hb_037887_010 Hb_000898_050 Hb_000898_050 Hb_003092_030--Hb_000898_050 Hb_006429_010 Hb_006429_010 Hb_003092_030--Hb_006429_010 Hb_006198_080--Hb_000700_110 Hb_000347_200 Hb_000347_200 Hb_006198_080--Hb_000347_200 Hb_006198_080--Hb_037887_010 Hb_006198_080--Hb_021238_050 Hb_093084_050 Hb_093084_050 Hb_000656_110--Hb_093084_050 Hb_000041_050 Hb_000041_050 Hb_000656_110--Hb_000041_050 Hb_001102_140 Hb_001102_140 Hb_000656_110--Hb_001102_140 Hb_000656_110--Hb_000700_110 Hb_000656_110--Hb_003125_010 Hb_000656_110--Hb_001369_690 Hb_004218_110 Hb_004218_110 Hb_002759_060--Hb_004218_110 Hb_001833_110 Hb_001833_110 Hb_002759_060--Hb_001833_110 Hb_027073_040 Hb_027073_040 Hb_002759_060--Hb_027073_040 Hb_003996_020 Hb_003996_020 Hb_002759_060--Hb_003996_020 Hb_002759_060--Hb_025240_040 Hb_000058_060 Hb_000058_060 Hb_002759_060--Hb_000058_060 Hb_004032_100 Hb_004032_100 Hb_180301_010--Hb_004032_100 Hb_004336_050 Hb_004336_050 Hb_180301_010--Hb_004336_050 Hb_000172_030 Hb_000172_030 Hb_180301_010--Hb_000172_030 Hb_004374_140 Hb_004374_140 Hb_180301_010--Hb_004374_140 Hb_000751_130 Hb_000751_130 Hb_180301_010--Hb_000751_130 Hb_007735_030 Hb_007735_030 Hb_180301_010--Hb_007735_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.04575 2.87113 3.10024 6.50596 4.32074 11.8195
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.7241 9.2708 10.2897 3.95138 3.9345

CAGE analysis