Hb_000107_330

Information

Type -
Description -
Location Contig107: 243659-244756
Sequence    

Annotation

kegg
ID pop:POPTR_0004s21920g
description hypothetical protein
nr
ID XP_012076504.1
description PREDICTED: pentatricopeptide repeat-containing protein At4g38150 [Jatropha curcas]
swissprot
ID Q9SZL5
description Pentatricopeptide repeat-containing protein At4g38150 OS=Arabidopsis thaliana GN=At4g38150 PE=2 SV=1
trembl
ID A0A067LF71
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10774 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02176: 243568-244398
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000107_330 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At4g38150 [Jatropha curcas]
2 Hb_044728_010 0.0496928022 - - -
3 Hb_000092_170 0.0638012439 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 14 [Jatropha curcas]
4 Hb_009767_110 0.0645849403 - - -
5 Hb_000085_050 0.0668557504 - - PREDICTED: grpE protein homolog, mitochondrial isoform X1 [Jatropha curcas]
6 Hb_003525_010 0.0684342864 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 24-like isoform X1 [Populus euphratica]
7 Hb_000025_640 0.0694240111 - - PREDICTED: probable magnesium transporter NIPA6 isoform X1 [Jatropha curcas]
8 Hb_005779_060 0.0698640308 - - PREDICTED: uncharacterized protein LOC105643212 isoform X2 [Jatropha curcas]
9 Hb_010618_010 0.0704978293 - - PREDICTED: inactive poly [ADP-ribose] polymerase RCD1 [Jatropha curcas]
10 Hb_120327_010 0.0716390938 - - PREDICTED: uncharacterized protein LOC105650959 [Jatropha curcas]
11 Hb_000225_040 0.0716685655 - - PREDICTED: translation factor GUF1 homolog, mitochondrial [Nelumbo nucifera]
12 Hb_002435_120 0.0730723346 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
13 Hb_001341_170 0.0737098739 - - PREDICTED: general transcription factor IIH subunit 2 [Jatropha curcas]
14 Hb_008554_130 0.0741285369 transcription factor TF Family: MYB PREDICTED: uncharacterized protein LOC105634317 [Jatropha curcas]
15 Hb_010128_080 0.0743723948 - - PREDICTED: pentatricopeptide repeat-containing protein At1g63330-like isoform X1 [Jatropha curcas]
16 Hb_000016_250 0.0760622192 - - unnamed protein product [Malassezia sympodialis ATCC 42132]
17 Hb_000032_520 0.0760628994 - - PREDICTED: F-box protein SKIP8-like [Jatropha curcas]
18 Hb_000757_060 0.0764804072 - - hypothetical protein PRUPE_ppa001141mg [Prunus persica]
19 Hb_007691_030 0.0765977615 desease resistance Gene Name: AAA PREDICTED: ATPase family AAA domain-containing protein 1-B [Jatropha curcas]
20 Hb_000395_190 0.0774612741 - - PREDICTED: F-box/LRR-repeat protein 7-like [Jatropha curcas]

Gene co-expression network

sample Hb_000107_330 Hb_000107_330 Hb_044728_010 Hb_044728_010 Hb_000107_330--Hb_044728_010 Hb_000092_170 Hb_000092_170 Hb_000107_330--Hb_000092_170 Hb_009767_110 Hb_009767_110 Hb_000107_330--Hb_009767_110 Hb_000085_050 Hb_000085_050 Hb_000107_330--Hb_000085_050 Hb_003525_010 Hb_003525_010 Hb_000107_330--Hb_003525_010 Hb_000025_640 Hb_000025_640 Hb_000107_330--Hb_000025_640 Hb_044728_010--Hb_009767_110 Hb_044728_010--Hb_000092_170 Hb_000225_040 Hb_000225_040 Hb_044728_010--Hb_000225_040 Hb_001675_180 Hb_001675_180 Hb_044728_010--Hb_001675_180 Hb_010618_010 Hb_010618_010 Hb_044728_010--Hb_010618_010 Hb_000092_170--Hb_003525_010 Hb_011485_070 Hb_011485_070 Hb_000092_170--Hb_011485_070 Hb_002078_350 Hb_002078_350 Hb_000092_170--Hb_002078_350 Hb_000092_170--Hb_009767_110 Hb_006649_050 Hb_006649_050 Hb_009767_110--Hb_006649_050 Hb_001198_100 Hb_001198_100 Hb_009767_110--Hb_001198_100 Hb_002725_120 Hb_002725_120 Hb_009767_110--Hb_002725_120 Hb_008554_130 Hb_008554_130 Hb_009767_110--Hb_008554_130 Hb_000684_470 Hb_000684_470 Hb_009767_110--Hb_000684_470 Hb_002183_090 Hb_002183_090 Hb_000085_050--Hb_002183_090 Hb_005618_170 Hb_005618_170 Hb_000085_050--Hb_005618_170 Hb_058999_020 Hb_058999_020 Hb_000085_050--Hb_058999_020 Hb_000976_170 Hb_000976_170 Hb_000085_050--Hb_000976_170 Hb_108350_010 Hb_108350_010 Hb_000085_050--Hb_108350_010 Hb_000085_160 Hb_000085_160 Hb_003525_010--Hb_000085_160 Hb_000334_280 Hb_000334_280 Hb_003525_010--Hb_000334_280 Hb_003525_010--Hb_000225_040 Hb_003428_030 Hb_003428_030 Hb_003525_010--Hb_003428_030 Hb_000215_110 Hb_000215_110 Hb_003525_010--Hb_000215_110 Hb_156279_020 Hb_156279_020 Hb_000025_640--Hb_156279_020 Hb_001902_030 Hb_001902_030 Hb_000025_640--Hb_001902_030 Hb_008847_030 Hb_008847_030 Hb_000025_640--Hb_008847_030 Hb_000025_640--Hb_008554_130 Hb_000032_520 Hb_000032_520 Hb_000025_640--Hb_000032_520
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.5675 3.28102 2.14204 3.09381 5.24129 4.66392
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.70342 5.7549 5.5243 4.31946 3.29095

CAGE analysis