Hb_000107_360

Information

Type -
Description -
Location Contig107: 254183-255457
Sequence    

Annotation

kegg
ID pop:POPTR_0004s21740g
description XYLEM CYSTEINE PEPTIDASE 1 family protein
nr
ID XP_012074410.1
description PREDICTED: xylem cysteine proteinase 1 [Jatropha curcas]
swissprot
ID O65493
description Xylem cysteine proteinase 1 OS=Arabidopsis thaliana GN=XCP1 PE=1 SV=1
trembl
ID A0A067LQY7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10746 PE=3 SV=1
Gene Ontology
ID GO:0008234
description xylem cysteine proteinase 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02179: 254141-255586
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000107_360 0.0 - - PREDICTED: xylem cysteine proteinase 1 [Jatropha curcas]
2 Hb_000072_230 0.0856049144 - - hypothetical protein POPTR_0004s10790g [Populus trichocarpa]
3 Hb_000964_050 0.1085324561 - - PREDICTED: uncharacterized protein LOC105628694 [Jatropha curcas]
4 Hb_006198_100 0.112297065 - - PREDICTED: RNA-binding protein 24-B isoform X1 [Jatropha curcas]
5 Hb_002818_060 0.1166389435 - - zinc finger protein, putative [Ricinus communis]
6 Hb_000417_090 0.12216769 - - CBL-interacting serine/threonine-protein kinase, putative [Ricinus communis]
7 Hb_005496_040 0.1223157009 - - PREDICTED: uncharacterized protein LOC105630864 [Jatropha curcas]
8 Hb_000028_080 0.1230440244 - - PREDICTED: uncharacterized protein At3g17950 [Jatropha curcas]
9 Hb_059226_010 0.1248478573 - - PREDICTED: kinesin-like protein NACK1 [Jatropha curcas]
10 Hb_003813_090 0.1252999623 - - PREDICTED: uncharacterized protein LOC105638743 [Jatropha curcas]
11 Hb_010889_010 0.1303652209 - - PREDICTED: myosin-12 [Jatropha curcas]
12 Hb_003750_120 0.132462814 - - PREDICTED: uncharacterized protein LOC105112992 [Populus euphratica]
13 Hb_002203_010 0.1334370699 - - PREDICTED: kinesin-like protein KIF18B isoform X1 [Vitis vinifera]
14 Hb_006693_010 0.1355122752 - - PREDICTED: uncharacterized protein LOC105628875 [Jatropha curcas]
15 Hb_000363_390 0.135789729 - - Benzoate carboxyl methyltransferase, putative [Ricinus communis]
16 Hb_047659_010 0.1358465809 - - conserved hypothetical protein [Ricinus communis]
17 Hb_001623_250 0.1359843132 - - PREDICTED: probable pectate lyase 8 [Jatropha curcas]
18 Hb_001007_020 0.1386608973 - - PREDICTED: bidirectional sugar transporter SWEET1 isoform X2 [Jatropha curcas]
19 Hb_000359_100 0.1394426449 - - conserved hypothetical protein [Ricinus communis]
20 Hb_001349_050 0.1432056149 - - PREDICTED: aspartic proteinase nepenthesin-1 [Jatropha curcas]

Gene co-expression network

sample Hb_000107_360 Hb_000107_360 Hb_000072_230 Hb_000072_230 Hb_000107_360--Hb_000072_230 Hb_000964_050 Hb_000964_050 Hb_000107_360--Hb_000964_050 Hb_006198_100 Hb_006198_100 Hb_000107_360--Hb_006198_100 Hb_002818_060 Hb_002818_060 Hb_000107_360--Hb_002818_060 Hb_000417_090 Hb_000417_090 Hb_000107_360--Hb_000417_090 Hb_005496_040 Hb_005496_040 Hb_000107_360--Hb_005496_040 Hb_000331_170 Hb_000331_170 Hb_000072_230--Hb_000331_170 Hb_000072_230--Hb_000417_090 Hb_000031_240 Hb_000031_240 Hb_000072_230--Hb_000031_240 Hb_011310_170 Hb_011310_170 Hb_000072_230--Hb_011310_170 Hb_000072_230--Hb_000964_050 Hb_001053_170 Hb_001053_170 Hb_000964_050--Hb_001053_170 Hb_002045_160 Hb_002045_160 Hb_000964_050--Hb_002045_160 Hb_003109_010 Hb_003109_010 Hb_000964_050--Hb_003109_010 Hb_001511_210 Hb_001511_210 Hb_000964_050--Hb_001511_210 Hb_059226_010 Hb_059226_010 Hb_006198_100--Hb_059226_010 Hb_002203_010 Hb_002203_010 Hb_006198_100--Hb_002203_010 Hb_002836_110 Hb_002836_110 Hb_006198_100--Hb_002836_110 Hb_000538_290 Hb_000538_290 Hb_006198_100--Hb_000538_290 Hb_009113_020 Hb_009113_020 Hb_006198_100--Hb_009113_020 Hb_001623_250 Hb_001623_250 Hb_006198_100--Hb_001623_250 Hb_001349_050 Hb_001349_050 Hb_002818_060--Hb_001349_050 Hb_002818_060--Hb_001623_250 Hb_002818_060--Hb_002203_010 Hb_000359_100 Hb_000359_100 Hb_002818_060--Hb_000359_100 Hb_002894_060 Hb_002894_060 Hb_002818_060--Hb_002894_060 Hb_000363_390 Hb_000363_390 Hb_002818_060--Hb_000363_390 Hb_000190_170 Hb_000190_170 Hb_000417_090--Hb_000190_170 Hb_000622_170 Hb_000622_170 Hb_000417_090--Hb_000622_170 Hb_004117_090 Hb_004117_090 Hb_000417_090--Hb_004117_090 Hb_000417_090--Hb_000331_170 Hb_000342_040 Hb_000342_040 Hb_005496_040--Hb_000342_040 Hb_003750_120 Hb_003750_120 Hb_005496_040--Hb_003750_120 Hb_008686_010 Hb_008686_010 Hb_005496_040--Hb_008686_010 Hb_000032_420 Hb_000032_420 Hb_005496_040--Hb_000032_420 Hb_005496_040--Hb_004117_090 Hb_000003_750 Hb_000003_750 Hb_005496_040--Hb_000003_750
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.020846 0.156501 5.03005 4.78951 0.0586101 0.0777267
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0954108 0.150087 0.0692789 0.286369 1.30935

CAGE analysis