Hb_000107_390

Information

Type -
Description -
Location Contig107: 275988-278452
Sequence    

Annotation

kegg
ID vvi:100245962
description uncharacterized LOC100245962
nr
ID XP_002277553.1
description PREDICTED: uncharacterized protein LOC100245962 [Vitis vinifera]
swissprot
ID -
description -
trembl
ID A0A067KL35
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14727 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02180: 276101-278361
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000107_390 0.0 - - PREDICTED: uncharacterized protein LOC100245962 [Vitis vinifera]
2 Hb_168918_020 0.0555929084 - - pectin acetylesterase, putative [Ricinus communis]
3 Hb_000538_020 0.0583447397 - - PREDICTED: autophagy protein 5 [Jatropha curcas]
4 Hb_012340_030 0.0591608387 - - PREDICTED: ankyrin repeat and SAM domain-containing protein 6 [Jatropha curcas]
5 Hb_000017_120 0.0726559753 - - PREDICTED: PIN2/TERF1-interacting telomerase inhibitor 1 [Jatropha curcas]
6 Hb_000771_110 0.0734322481 - - protein phosphatase 2C [Hevea brasiliensis]
7 Hb_000001_020 0.0776223915 - - PREDICTED: homogentisate solanesyltransferase, chloroplastic [Jatropha curcas]
8 Hb_000418_180 0.078528013 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000417_180 0.0790519121 - - 60S ribosomal protein L11, putative [Ricinus communis]
10 Hb_000666_110 0.0798555335 - - PREDICTED: transcription initiation factor TFIID subunit 11 [Jatropha curcas]
11 Hb_005527_050 0.0817787043 - - PREDICTED: uncharacterized protein LOC105643024 [Jatropha curcas]
12 Hb_002997_170 0.0818952923 - - PREDICTED: uncharacterized protein LOC105131887 [Populus euphratica]
13 Hb_007152_020 0.0822499963 - - PREDICTED: zinc finger CCCH domain-containing protein 62 isoform X2 [Jatropha curcas]
14 Hb_002272_250 0.0830410934 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
15 Hb_011794_090 0.0842737386 - - PREDICTED: uncharacterized protein LOC105642993 [Jatropha curcas]
16 Hb_000905_190 0.0851381173 - - PREDICTED: U6 snRNA-associated Sm-like protein LSm7 [Elaeis guineensis]
17 Hb_005843_110 0.0865234187 - - Caltractin, putative [Ricinus communis]
18 Hb_000000_080 0.0879766796 - - lipoate-protein ligase B, putative [Ricinus communis]
19 Hb_003688_100 0.0889755309 - - Uncharacterized protein TCM_002515 [Theobroma cacao]
20 Hb_000329_690 0.0903447165 - - PREDICTED: uncharacterized protein LOC105643212 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_000107_390 Hb_000107_390 Hb_168918_020 Hb_168918_020 Hb_000107_390--Hb_168918_020 Hb_000538_020 Hb_000538_020 Hb_000107_390--Hb_000538_020 Hb_012340_030 Hb_012340_030 Hb_000107_390--Hb_012340_030 Hb_000017_120 Hb_000017_120 Hb_000107_390--Hb_000017_120 Hb_000771_110 Hb_000771_110 Hb_000107_390--Hb_000771_110 Hb_000001_020 Hb_000001_020 Hb_000107_390--Hb_000001_020 Hb_168918_020--Hb_012340_030 Hb_168918_020--Hb_000017_120 Hb_002997_170 Hb_002997_170 Hb_168918_020--Hb_002997_170 Hb_001776_110 Hb_001776_110 Hb_168918_020--Hb_001776_110 Hb_118419_020 Hb_118419_020 Hb_168918_020--Hb_118419_020 Hb_000666_110 Hb_000666_110 Hb_000538_020--Hb_000666_110 Hb_000270_840 Hb_000270_840 Hb_000538_020--Hb_000270_840 Hb_004722_060 Hb_004722_060 Hb_000538_020--Hb_004722_060 Hb_019962_030 Hb_019962_030 Hb_000538_020--Hb_019962_030 Hb_005527_050 Hb_005527_050 Hb_000538_020--Hb_005527_050 Hb_001823_100 Hb_001823_100 Hb_012340_030--Hb_001823_100 Hb_012340_030--Hb_000017_120 Hb_002272_250 Hb_002272_250 Hb_012340_030--Hb_002272_250 Hb_012340_030--Hb_118419_020 Hb_001006_170 Hb_001006_170 Hb_000017_120--Hb_001006_170 Hb_001030_120 Hb_001030_120 Hb_000017_120--Hb_001030_120 Hb_004223_130 Hb_004223_130 Hb_000017_120--Hb_004223_130 Hb_002631_050 Hb_002631_050 Hb_000017_120--Hb_002631_050 Hb_000017_120--Hb_002272_250 Hb_002249_140 Hb_002249_140 Hb_000771_110--Hb_002249_140 Hb_001001_160 Hb_001001_160 Hb_000771_110--Hb_001001_160 Hb_000771_110--Hb_000001_020 Hb_000481_010 Hb_000481_010 Hb_000771_110--Hb_000481_010 Hb_000025_200 Hb_000025_200 Hb_000771_110--Hb_000025_200 Hb_003609_040 Hb_003609_040 Hb_000001_020--Hb_003609_040 Hb_000001_020--Hb_000025_200 Hb_007908_020 Hb_007908_020 Hb_000001_020--Hb_007908_020 Hb_000001_020--Hb_000017_120 Hb_000761_020 Hb_000761_020 Hb_000001_020--Hb_000761_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
169.63 30.4219 45.2106 24.1107 140.278 117.231
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
110.801 119.419 102.758 25.9582 16.1095

CAGE analysis