Hb_000107_410

Information

Type -
Description -
Location Contig107: 281433-283463
Sequence    

Annotation

kegg
ID rcu:RCOM_1565850
description Alpha-expansin 20 precursor, putative
nr
ID XP_012075288.1
description PREDICTED: expansin-A20 [Jatropha curcas]
swissprot
ID Q9SZM1
description Expansin-A20 OS=Arabidopsis thaliana GN=EXPA20 PE=2 SV=1
trembl
ID A0A067LHZ9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10755 PE=3 SV=1
Gene Ontology
ID GO:0005576
description alpha-expansin 20 precursor family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000107_410 0.0 - - PREDICTED: expansin-A20 [Jatropha curcas]
2 Hb_000207_120 0.1315109912 - - PREDICTED: subtilisin-like protease SBT3.3 [Jatropha curcas]
3 Hb_033594_030 0.136900944 - - PREDICTED: putative glycosyltransferase 7 [Jatropha curcas]
4 Hb_002333_080 0.1688604615 transcription factor TF Family: TCP PREDICTED: transcription factor TCP20-like [Populus euphratica]
5 Hb_001584_080 0.1796436252 - - hypothetical protein JCGZ_23206 [Jatropha curcas]
6 Hb_004286_040 0.1827607261 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH74 isoform X1 [Jatropha curcas]
7 Hb_002946_160 0.187932191 - - PREDICTED: uricase-2 isozyme 2 [Jatropha curcas]
8 Hb_030385_010 0.1882212554 - - PREDICTED: zinc-binding alcohol dehydrogenase domain-containing protein 2-like [Jatropha curcas]
9 Hb_029879_110 0.1882947176 - - PREDICTED: pentatricopeptide repeat-containing protein At1g61870, mitochondrial [Jatropha curcas]
10 Hb_004310_030 0.1894397432 - - PREDICTED: tRNA wybutosine-synthesizing protein 4 [Jatropha curcas]
11 Hb_000109_240 0.1908862116 - - PREDICTED: uncharacterized protein LOC102615432 [Citrus sinensis]
12 Hb_010417_080 0.1915039817 - - PREDICTED: uncharacterized protein LOC105645742 isoform X1 [Jatropha curcas]
13 Hb_007894_140 0.1915906737 - - PREDICTED: polyadenylate-binding protein-interacting protein 4 [Jatropha curcas]
14 Hb_000815_130 0.1920867244 - - PREDICTED: uncharacterized endoplasmic reticulum membrane protein C16E8.02-like [Jatropha curcas]
15 Hb_000000_460 0.1921445538 - - PREDICTED: peroxisomal membrane protein 11A [Jatropha curcas]
16 Hb_000347_280 0.1926531235 - - PREDICTED: aldehyde dehydrogenase family 7 member B4-like [Populus euphratica]
17 Hb_000390_200 0.1943882787 - - PREDICTED: uncharacterized protein LOC105632462 [Jatropha curcas]
18 Hb_000521_080 0.1961176934 - - Zinc finger BED domain-containing 4 [Gossypium arboreum]
19 Hb_002685_020 0.1963898811 - - -
20 Hb_001373_150 0.196493807 - - PREDICTED: uncharacterized protein LOC105628778 [Jatropha curcas]

Gene co-expression network

sample Hb_000107_410 Hb_000107_410 Hb_000207_120 Hb_000207_120 Hb_000107_410--Hb_000207_120 Hb_033594_030 Hb_033594_030 Hb_000107_410--Hb_033594_030 Hb_002333_080 Hb_002333_080 Hb_000107_410--Hb_002333_080 Hb_001584_080 Hb_001584_080 Hb_000107_410--Hb_001584_080 Hb_004286_040 Hb_004286_040 Hb_000107_410--Hb_004286_040 Hb_002946_160 Hb_002946_160 Hb_000107_410--Hb_002946_160 Hb_030385_010 Hb_030385_010 Hb_000207_120--Hb_030385_010 Hb_003693_070 Hb_003693_070 Hb_000207_120--Hb_003693_070 Hb_000207_120--Hb_002946_160 Hb_000207_120--Hb_033594_030 Hb_106724_020 Hb_106724_020 Hb_000207_120--Hb_106724_020 Hb_000808_280 Hb_000808_280 Hb_000207_120--Hb_000808_280 Hb_000270_490 Hb_000270_490 Hb_033594_030--Hb_000270_490 Hb_003994_290 Hb_003994_290 Hb_033594_030--Hb_003994_290 Hb_003050_270 Hb_003050_270 Hb_033594_030--Hb_003050_270 Hb_003571_030 Hb_003571_030 Hb_033594_030--Hb_003571_030 Hb_073973_100 Hb_073973_100 Hb_033594_030--Hb_073973_100 Hb_000500_090 Hb_000500_090 Hb_002333_080--Hb_000500_090 Hb_004970_110 Hb_004970_110 Hb_002333_080--Hb_004970_110 Hb_003120_030 Hb_003120_030 Hb_002333_080--Hb_003120_030 Hb_001329_220 Hb_001329_220 Hb_002333_080--Hb_001329_220 Hb_007317_180 Hb_007317_180 Hb_002333_080--Hb_007317_180 Hb_011828_020 Hb_011828_020 Hb_002333_080--Hb_011828_020 Hb_007403_060 Hb_007403_060 Hb_001584_080--Hb_007403_060 Hb_033642_110 Hb_033642_110 Hb_001584_080--Hb_033642_110 Hb_005143_040 Hb_005143_040 Hb_001584_080--Hb_005143_040 Hb_001584_080--Hb_000500_090 Hb_004899_050 Hb_004899_050 Hb_001584_080--Hb_004899_050 Hb_002596_040 Hb_002596_040 Hb_001584_080--Hb_002596_040 Hb_006120_200 Hb_006120_200 Hb_004286_040--Hb_006120_200 Hb_027380_040 Hb_027380_040 Hb_004286_040--Hb_027380_040 Hb_000120_240 Hb_000120_240 Hb_004286_040--Hb_000120_240 Hb_000956_130 Hb_000956_130 Hb_004286_040--Hb_000956_130 Hb_002043_180 Hb_002043_180 Hb_004286_040--Hb_002043_180 Hb_002027_220 Hb_002027_220 Hb_004286_040--Hb_002027_220 Hb_000270_630 Hb_000270_630 Hb_002946_160--Hb_000270_630 Hb_030116_020 Hb_030116_020 Hb_002946_160--Hb_030116_020 Hb_000367_010 Hb_000367_010 Hb_002946_160--Hb_000367_010 Hb_007904_160 Hb_007904_160 Hb_002946_160--Hb_007904_160 Hb_000109_210 Hb_000109_210 Hb_002946_160--Hb_000109_210 Hb_000983_150 Hb_000983_150 Hb_002946_160--Hb_000983_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.20221 1.30325 0.909555 3.5655 1.97902 2.81493
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.00517 2.21104 1.88529 4.64668 1.15673

CAGE analysis