Hb_000107_420

Information

Type -
Description -
Location Contig107: 287504-289405
Sequence    

Annotation

kegg
ID vvi:100265928
description pentatricopeptide repeat-containing protein At2g03880, mitochondrial
nr
ID XP_012074714.1
description PREDICTED: pentatricopeptide repeat-containing protein At2g03880, mitochondrial [Jatropha curcas]
swissprot
ID Q9SI53
description Pentatricopeptide repeat-containing protein At2g03880, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H44 PE=2 SV=1
trembl
ID A0A067LF48
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10749 PE=4 SV=1
Gene Ontology
ID GO:0005515
description pentatricopeptide repeat-containing protein mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02187: 288112-288561
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000107_420 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At2g03880, mitochondrial [Jatropha curcas]
2 Hb_000206_240 0.0722307538 - - conserved hypothetical protein [Ricinus communis]
3 Hb_001085_060 0.07902561 - - PREDICTED: pentatricopeptide repeat-containing protein At1g04840 [Jatropha curcas]
4 Hb_007441_220 0.0849937228 - - PREDICTED: eukaryotic translation initiation factor 4G [Jatropha curcas]
5 Hb_004374_070 0.0899605371 - - PREDICTED: pentatricopeptide repeat-containing protein At2g13600-like [Jatropha curcas]
6 Hb_002276_130 0.0954184539 - - inositol or phosphatidylinositol kinase, putative [Ricinus communis]
7 Hb_000204_210 0.0963004531 - - PREDICTED: uncharacterized protein LOC105639237 [Jatropha curcas]
8 Hb_011716_030 0.0973957818 - - PREDICTED: putative pentatricopeptide repeat-containing protein At3g23330 [Populus euphratica]
9 Hb_000213_100 0.0974418407 - - PREDICTED: pentatricopeptide repeat-containing protein At1g79540-like [Jatropha curcas]
10 Hb_000041_100 0.10420495 - - PREDICTED: zinc finger CCCH domain-containing protein 41 [Jatropha curcas]
11 Hb_005015_070 0.1048973779 - - PREDICTED: pentatricopeptide repeat-containing protein At4g39530 [Jatropha curcas]
12 Hb_002316_150 0.1055324534 transcription factor TF Family: IWS1 PREDICTED: uncharacterized protein LOC105640420 [Jatropha curcas]
13 Hb_004846_070 0.1057701004 - - PREDICTED: pentatricopeptide repeat-containing protein At3g14730 [Populus euphratica]
14 Hb_048219_010 0.1066475002 - - coronatine-insensitive 1 [Hevea brasiliensis]
15 Hb_000866_170 0.106893048 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
16 Hb_000140_230 0.1077702518 - - PREDICTED: pentatricopeptide repeat-containing protein At3g61520, mitochondrial-like [Jatropha curcas]
17 Hb_000270_670 0.1086818442 transcription factor TF Family: IWS1 PREDICTED: uncharacterized protein LOC105640420 [Jatropha curcas]
18 Hb_168697_010 0.1096907141 - - hypothetical protein JCGZ_16772 [Jatropha curcas]
19 Hb_003906_160 0.1110343979 - - PREDICTED: pentatricopeptide repeat-containing protein At2g22410, mitochondrial-like [Jatropha curcas]
20 Hb_003371_090 0.1119059579 - - PREDICTED: uncharacterized protein LOC105650336 [Jatropha curcas]

Gene co-expression network

sample Hb_000107_420 Hb_000107_420 Hb_000206_240 Hb_000206_240 Hb_000107_420--Hb_000206_240 Hb_001085_060 Hb_001085_060 Hb_000107_420--Hb_001085_060 Hb_007441_220 Hb_007441_220 Hb_000107_420--Hb_007441_220 Hb_004374_070 Hb_004374_070 Hb_000107_420--Hb_004374_070 Hb_002276_130 Hb_002276_130 Hb_000107_420--Hb_002276_130 Hb_000204_210 Hb_000204_210 Hb_000107_420--Hb_000204_210 Hb_004052_090 Hb_004052_090 Hb_000206_240--Hb_004052_090 Hb_004846_070 Hb_004846_070 Hb_000206_240--Hb_004846_070 Hb_000213_100 Hb_000213_100 Hb_000206_240--Hb_000213_100 Hb_000258_270 Hb_000258_270 Hb_000206_240--Hb_000258_270 Hb_007483_100 Hb_007483_100 Hb_000206_240--Hb_007483_100 Hb_001085_060--Hb_007441_220 Hb_000041_100 Hb_000041_100 Hb_001085_060--Hb_000041_100 Hb_002942_100 Hb_002942_100 Hb_001085_060--Hb_002942_100 Hb_000603_110 Hb_000603_110 Hb_001085_060--Hb_000603_110 Hb_002316_150 Hb_002316_150 Hb_001085_060--Hb_002316_150 Hb_007441_220--Hb_000041_100 Hb_007441_220--Hb_002316_150 Hb_000270_670 Hb_000270_670 Hb_007441_220--Hb_000270_670 Hb_001999_090 Hb_001999_090 Hb_007441_220--Hb_001999_090 Hb_000245_040 Hb_000245_040 Hb_007441_220--Hb_000245_040 Hb_000056_240 Hb_000056_240 Hb_004374_070--Hb_000056_240 Hb_004374_070--Hb_000041_100 Hb_003371_090 Hb_003371_090 Hb_004374_070--Hb_003371_090 Hb_000866_220 Hb_000866_220 Hb_004374_070--Hb_000866_220 Hb_004374_070--Hb_007483_100 Hb_002725_120 Hb_002725_120 Hb_004374_070--Hb_002725_120 Hb_000866_170 Hb_000866_170 Hb_002276_130--Hb_000866_170 Hb_002276_130--Hb_000245_040 Hb_006938_080 Hb_006938_080 Hb_002276_130--Hb_006938_080 Hb_010874_020 Hb_010874_020 Hb_002276_130--Hb_010874_020 Hb_002276_130--Hb_000206_240 Hb_001584_150 Hb_001584_150 Hb_000204_210--Hb_001584_150 Hb_008500_010 Hb_008500_010 Hb_000204_210--Hb_008500_010 Hb_002678_020 Hb_002678_020 Hb_000204_210--Hb_002678_020 Hb_001507_020 Hb_001507_020 Hb_000204_210--Hb_001507_020 Hb_001141_390 Hb_001141_390 Hb_000204_210--Hb_001141_390 Hb_009486_200 Hb_009486_200 Hb_000204_210--Hb_009486_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.91263 2.00723 0.302036 0.932016 1.13291 1.6048
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.763699 1.74633 2.63136 1.21084 1.06984

CAGE analysis