Hb_000107_430

Information

Type -
Description -
Location Contig107: 301216-312003
Sequence    

Annotation

kegg
ID pop:POPTR_0009s17080g
description POPTRDRAFT_803959; guanine nucleotide exchange family protein
nr
ID XP_012075487.1
description PREDICTED: brefeldin A-inhibited guanine nucleotide-exchange protein 1 [Jatropha curcas]
swissprot
ID F4JSZ5
description Brefeldin A-inhibited guanine nucleotide-exchange protein 1 OS=Arabidopsis thaliana GN=BIG1 PE=2 SV=1
trembl
ID A0A067LEX5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10758 PE=4 SV=1
Gene Ontology
ID GO:0005086
description brefeldin a-inhibited guanine nucleotide-exchange protein 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02189: 307615-308246
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000107_430 0.0 - - PREDICTED: brefeldin A-inhibited guanine nucleotide-exchange protein 1 [Jatropha curcas]
2 Hb_002762_110 0.0605525325 - - conserved hypothetical protein [Ricinus communis]
3 Hb_003053_110 0.0674107445 - - PREDICTED: protease Do-like 1, chloroplastic [Jatropha curcas]
4 Hb_007741_110 0.0738751871 - - -
5 Hb_007192_030 0.0747549908 - - PREDICTED: manganese-dependent ADP-ribose/CDP-alcohol diphosphatase [Jatropha curcas]
6 Hb_000167_110 0.0749329956 - - glycerol-3-phosphate dehydrogenase, putative [Ricinus communis]
7 Hb_004644_030 0.0810234523 - - PREDICTED: FAD synthase isoform X3 [Jatropha curcas]
8 Hb_001277_100 0.0830636782 - - PREDICTED: 2-methyl-6-phytyl-1,4-hydroquinone methyltransferase, chloroplastic-like isoform X1 [Gossypium raimondii]
9 Hb_000622_290 0.0838513522 - - PREDICTED: F-box/kelch-repeat protein At3g61590 [Jatropha curcas]
10 Hb_171215_010 0.0849351473 - - vesicle-associated membrane protein, putative [Ricinus communis]
11 Hb_001226_140 0.085336355 - - PREDICTED: protein phosphatase 2C 77-like [Jatropha curcas]
12 Hb_000364_050 0.0858067999 - - PREDICTED: CBS domain-containing protein CBSX1, chloroplastic [Jatropha curcas]
13 Hb_002078_340 0.0858488794 - - PREDICTED: uncharacterized protein LOC105644820 isoform X2 [Jatropha curcas]
14 Hb_007904_230 0.0864035396 - - PREDICTED: D-cysteine desulfhydrase 2, mitochondrial [Jatropha curcas]
15 Hb_001946_380 0.0868334388 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 34-like [Jatropha curcas]
16 Hb_001195_770 0.0876050107 - - PREDICTED: probable E3 ubiquitin-protein ligase ARI2 [Jatropha curcas]
17 Hb_012150_030 0.0883438055 - - PREDICTED: aspartate--tRNA ligase, mitochondrial [Jatropha curcas]
18 Hb_008421_020 0.0901544038 - - PREDICTED: uncharacterized protein LOC105635546 isoform X2 [Jatropha curcas]
19 Hb_011671_260 0.090275366 - - PREDICTED: putative lipase ROG1 isoform X1 [Jatropha curcas]
20 Hb_008705_020 0.0906236944 - - PREDICTED: lisH domain and HEAT repeat-containing protein KIAA1468 homolog isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000107_430 Hb_000107_430 Hb_002762_110 Hb_002762_110 Hb_000107_430--Hb_002762_110 Hb_003053_110 Hb_003053_110 Hb_000107_430--Hb_003053_110 Hb_007741_110 Hb_007741_110 Hb_000107_430--Hb_007741_110 Hb_007192_030 Hb_007192_030 Hb_000107_430--Hb_007192_030 Hb_000167_110 Hb_000167_110 Hb_000107_430--Hb_000167_110 Hb_004644_030 Hb_004644_030 Hb_000107_430--Hb_004644_030 Hb_002762_110--Hb_004644_030 Hb_000622_290 Hb_000622_290 Hb_002762_110--Hb_000622_290 Hb_002762_110--Hb_003053_110 Hb_000077_150 Hb_000077_150 Hb_002762_110--Hb_000077_150 Hb_001214_050 Hb_001214_050 Hb_002762_110--Hb_001214_050 Hb_012150_030 Hb_012150_030 Hb_003053_110--Hb_012150_030 Hb_000941_100 Hb_000941_100 Hb_003053_110--Hb_000941_100 Hb_008705_020 Hb_008705_020 Hb_003053_110--Hb_008705_020 Hb_001195_770 Hb_001195_770 Hb_003053_110--Hb_001195_770 Hb_003053_110--Hb_007741_110 Hb_134849_010 Hb_134849_010 Hb_003053_110--Hb_134849_010 Hb_006907_060 Hb_006907_060 Hb_007741_110--Hb_006907_060 Hb_001438_010 Hb_001438_010 Hb_007741_110--Hb_001438_010 Hb_007741_110--Hb_012150_030 Hb_002631_240 Hb_002631_240 Hb_007741_110--Hb_002631_240 Hb_001369_790 Hb_001369_790 Hb_007192_030--Hb_001369_790 Hb_000086_080 Hb_000086_080 Hb_007192_030--Hb_000086_080 Hb_000394_180 Hb_000394_180 Hb_007192_030--Hb_000394_180 Hb_007192_030--Hb_000622_290 Hb_007904_230 Hb_007904_230 Hb_007192_030--Hb_007904_230 Hb_004951_060 Hb_004951_060 Hb_007192_030--Hb_004951_060 Hb_011671_260 Hb_011671_260 Hb_000167_110--Hb_011671_260 Hb_000167_110--Hb_008705_020 Hb_000167_110--Hb_003053_110 Hb_003411_090 Hb_003411_090 Hb_000167_110--Hb_003411_090 Hb_003266_030 Hb_003266_030 Hb_000167_110--Hb_003266_030 Hb_004644_030--Hb_000077_150 Hb_004644_030--Hb_000622_290 Hb_008147_080 Hb_008147_080 Hb_004644_030--Hb_008147_080 Hb_004644_030--Hb_003053_110 Hb_001578_020 Hb_001578_020 Hb_004644_030--Hb_001578_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.8275 1.55037 3.73322 3.94178 1.34273 1.30277
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.97099 2.94294 3.05997 2.23881 6.05263

CAGE analysis