Hb_000107_460

Information

Type -
Description -
Location Contig107: 335217-335474
Sequence    

Annotation

kegg
ID sot:102593226
description uncharacterized LOC102593226
nr
ID XP_010241277.1
description PREDICTED: uncharacterized protein LOC104585930 [Nelumbo nucifera]
swissprot
ID -
description -
trembl
ID A5B781
description Putative uncharacterized protein (Fragment) OS=Vitis vinifera GN=VITISV_000585 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000107_460 0.0 - - PREDICTED: uncharacterized protein LOC104585930 [Nelumbo nucifera]
2 Hb_001504_290 0.0068549482 - - PREDICTED: uncharacterized protein LOC105650390, partial [Jatropha curcas]
3 Hb_003724_030 0.0083237242 - - -
4 Hb_000526_130 0.0102591925 - - PREDICTED: cytochrome P450 705A5-like [Jatropha curcas]
5 Hb_008159_030 0.0126174848 - - hypothetical protein B456_004G088300 [Gossypium raimondii]
6 Hb_009230_030 0.017573868 - - -
7 Hb_072368_010 0.0222788795 - - PREDICTED: uncharacterized protein LOC104800023, partial [Tarenaya hassleriana]
8 Hb_004693_030 0.024917135 - - PREDICTED: putative ribonuclease H protein At1g65750 [Malus domestica]
9 Hb_000866_480 0.0262414513 - - -
10 Hb_022693_100 0.0271172919 - - receptor serine-threonine protein kinase, putative [Ricinus communis]
11 Hb_005228_090 0.027618967 - - PREDICTED: magnesium transporter MRS2-3-like [Citrus sinensis]
12 Hb_006364_010 0.0282636655 - - -
13 Hb_006810_080 0.0320699553 - - hypothetical protein EUGRSUZ_C015472, partial [Eucalyptus grandis]
14 Hb_176138_010 0.032309113 - - PREDICTED: wall-associated receptor kinase-like 22 [Jatropha curcas]
15 Hb_000163_310 0.0375226805 - - PREDICTED: ABC transporter C family member 4-like [Malus domestica]
16 Hb_007441_030 0.0427441781 - - PREDICTED: uclacyanin-2-like [Jatropha curcas]
17 Hb_006124_010 0.0445527312 - - -
18 Hb_000703_310 0.0455586642 - - -
19 Hb_002621_020 0.0489479014 - - -
20 Hb_161981_020 0.0512592027 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]

Gene co-expression network

sample Hb_000107_460 Hb_000107_460 Hb_001504_290 Hb_001504_290 Hb_000107_460--Hb_001504_290 Hb_003724_030 Hb_003724_030 Hb_000107_460--Hb_003724_030 Hb_000526_130 Hb_000526_130 Hb_000107_460--Hb_000526_130 Hb_008159_030 Hb_008159_030 Hb_000107_460--Hb_008159_030 Hb_009230_030 Hb_009230_030 Hb_000107_460--Hb_009230_030 Hb_072368_010 Hb_072368_010 Hb_000107_460--Hb_072368_010 Hb_001504_290--Hb_003724_030 Hb_001504_290--Hb_000526_130 Hb_001504_290--Hb_009230_030 Hb_000866_480 Hb_000866_480 Hb_001504_290--Hb_000866_480 Hb_001504_290--Hb_008159_030 Hb_003724_030--Hb_000526_130 Hb_003724_030--Hb_009230_030 Hb_003724_030--Hb_000866_480 Hb_022693_100 Hb_022693_100 Hb_003724_030--Hb_022693_100 Hb_000526_130--Hb_009230_030 Hb_000526_130--Hb_000866_480 Hb_000526_130--Hb_022693_100 Hb_008159_030--Hb_072368_010 Hb_004693_030 Hb_004693_030 Hb_008159_030--Hb_004693_030 Hb_005228_090 Hb_005228_090 Hb_008159_030--Hb_005228_090 Hb_006364_010 Hb_006364_010 Hb_008159_030--Hb_006364_010 Hb_009230_030--Hb_000866_480 Hb_009230_030--Hb_022693_100 Hb_006810_080 Hb_006810_080 Hb_009230_030--Hb_006810_080 Hb_072368_010--Hb_004693_030 Hb_072368_010--Hb_005228_090 Hb_072368_010--Hb_006364_010 Hb_000163_310 Hb_000163_310 Hb_072368_010--Hb_000163_310 Hb_007441_030 Hb_007441_030 Hb_072368_010--Hb_007441_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.253265 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.632087 0

CAGE analysis