Hb_000107_480

Information

Type transcription factor
Description TF Family: ARID
Location Contig107: 341885-347085
Sequence    

Annotation

kegg
ID rcu:RCOM_1565520
description transcription factor, putative
nr
ID XP_012075704.1
description PREDICTED: AT-rich interactive domain-containing protein 6-like isoform X1 [Jatropha curcas]
swissprot
ID Q940Y3
description AT-rich interactive domain-containing protein 3 OS=Arabidopsis thaliana GN=ARID3 PE=1 SV=1
trembl
ID A0A067LF61
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10764 PE=3 SV=1
Gene Ontology
ID GO:0003677
description at-rich interactive domain-containing protein 5-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02192: 341789-343225 , PASA_asmbl_02193: 341789-343968 , PASA_asmbl_02195: 346939-347555
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000107_480 0.0 transcription factor TF Family: ARID PREDICTED: AT-rich interactive domain-containing protein 6-like isoform X1 [Jatropha curcas]
2 Hb_005725_030 0.1289239634 - - PREDICTED: U-box domain-containing protein 27-like [Beta vulgaris subsp. vulgaris]
3 Hb_013405_150 0.1292236569 - - PREDICTED: actin cytoskeleton-regulatory complex protein pan1 [Jatropha curcas]
4 Hb_001409_060 0.139747906 transcription factor TF Family: TRAF Regulatory protein NPR1, putative [Ricinus communis]
5 Hb_002056_100 0.1446919547 transcription factor TF Family: C2H2 PREDICTED: probable lysine-specific demethylase ELF6 [Jatropha curcas]
6 Hb_000120_380 0.147347813 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5-like [Jatropha curcas]
7 Hb_000663_080 0.1476204642 transcription factor TF Family: HB Homeobox protein HAT3.1, putative [Ricinus communis]
8 Hb_001839_020 0.1493485623 - - PREDICTED: mitogen-activated protein kinase kinase kinase YODA [Jatropha curcas]
9 Hb_006502_020 0.1501116766 - - PREDICTED: mitogen-activated protein kinase kinase kinase 1-like [Jatropha curcas]
10 Hb_044155_010 0.1527538739 - - PREDICTED: probable cadmium/zinc-transporting ATPase HMA1, chloroplastic [Jatropha curcas]
11 Hb_001301_130 0.1529480361 - - PREDICTED: uncharacterized protein LOC105632935 [Jatropha curcas]
12 Hb_002400_230 0.1532540265 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 6-like [Jatropha curcas]
13 Hb_002929_060 0.1536356032 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000115_340 0.1552257348 - - PREDICTED: uncharacterized protein LOC105642055 [Jatropha curcas]
15 Hb_000343_150 0.1554922343 - - PREDICTED: MAR-binding filament-like protein 1-1 [Jatropha curcas]
16 Hb_000264_180 0.1557072527 - - PREDICTED: uncharacterized protein LOC100777318 [Glycine max]
17 Hb_005731_110 0.1559703524 - - PREDICTED: uncharacterized protein LOC105108367 isoform X1 [Populus euphratica]
18 Hb_003225_020 0.1563040649 transcription factor TF Family: HB PREDICTED: homeobox protein HAT3.1 [Jatropha curcas]
19 Hb_003228_100 0.1567980609 - - PREDICTED: kinesin-related protein 4 [Jatropha curcas]
20 Hb_006569_040 0.1568055587 transcription factor TF Family: GNAT PREDICTED: uncharacterized protein LOC105650906 [Jatropha curcas]

Gene co-expression network

sample Hb_000107_480 Hb_000107_480 Hb_005725_030 Hb_005725_030 Hb_000107_480--Hb_005725_030 Hb_013405_150 Hb_013405_150 Hb_000107_480--Hb_013405_150 Hb_001409_060 Hb_001409_060 Hb_000107_480--Hb_001409_060 Hb_002056_100 Hb_002056_100 Hb_000107_480--Hb_002056_100 Hb_000120_380 Hb_000120_380 Hb_000107_480--Hb_000120_380 Hb_000663_080 Hb_000663_080 Hb_000107_480--Hb_000663_080 Hb_002929_060 Hb_002929_060 Hb_005725_030--Hb_002929_060 Hb_001500_060 Hb_001500_060 Hb_005725_030--Hb_001500_060 Hb_001252_230 Hb_001252_230 Hb_005725_030--Hb_001252_230 Hb_000061_030 Hb_000061_030 Hb_005725_030--Hb_000061_030 Hb_170416_010 Hb_170416_010 Hb_005725_030--Hb_170416_010 Hb_001761_120 Hb_001761_120 Hb_005725_030--Hb_001761_120 Hb_000077_120 Hb_000077_120 Hb_013405_150--Hb_000077_120 Hb_000890_010 Hb_000890_010 Hb_013405_150--Hb_000890_010 Hb_044155_010 Hb_044155_010 Hb_013405_150--Hb_044155_010 Hb_006132_040 Hb_006132_040 Hb_013405_150--Hb_006132_040 Hb_000139_220 Hb_000139_220 Hb_013405_150--Hb_000139_220 Hb_000343_150 Hb_000343_150 Hb_013405_150--Hb_000343_150 Hb_102948_010 Hb_102948_010 Hb_001409_060--Hb_102948_010 Hb_001766_070 Hb_001766_070 Hb_001409_060--Hb_001766_070 Hb_002218_020 Hb_002218_020 Hb_001409_060--Hb_002218_020 Hb_000673_010 Hb_000673_010 Hb_001409_060--Hb_000673_010 Hb_001409_060--Hb_000663_080 Hb_001430_020 Hb_001430_020 Hb_001409_060--Hb_001430_020 Hb_000806_030 Hb_000806_030 Hb_002056_100--Hb_000806_030 Hb_000645_130 Hb_000645_130 Hb_002056_100--Hb_000645_130 Hb_000500_300 Hb_000500_300 Hb_002056_100--Hb_000500_300 Hb_009302_030 Hb_009302_030 Hb_002056_100--Hb_009302_030 Hb_004659_090 Hb_004659_090 Hb_002056_100--Hb_004659_090 Hb_000030_140 Hb_000030_140 Hb_002056_100--Hb_000030_140 Hb_000975_210 Hb_000975_210 Hb_000120_380--Hb_000975_210 Hb_000120_380--Hb_000500_300 Hb_000120_380--Hb_002056_100 Hb_000120_380--Hb_000806_030 Hb_000245_150 Hb_000245_150 Hb_000120_380--Hb_000245_150 Hb_000120_380--Hb_000663_080 Hb_006120_040 Hb_006120_040 Hb_000663_080--Hb_006120_040 Hb_000011_240 Hb_000011_240 Hb_000663_080--Hb_000011_240 Hb_000086_270 Hb_000086_270 Hb_000663_080--Hb_000086_270 Hb_000663_080--Hb_000975_210 Hb_006846_170 Hb_006846_170 Hb_000663_080--Hb_006846_170 Hb_003228_100 Hb_003228_100 Hb_000663_080--Hb_003228_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.82153 6.12407 9.25361 1.7908 5.55986 2.64099
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.16497 1.70337 2.86902 1.32447 4.79442

CAGE analysis