Hb_000107_490

Information

Type transcription factor
Description TF Family: FAR1
Location Contig107: 347044-351100
Sequence    

Annotation

kegg
ID cit:102628171
description protein FAR1-RELATED SEQUENCE 5-like
nr
ID XP_012075861.1
description PREDICTED: protein FAR1-RELATED SEQUENCE 5 [Jatropha curcas]
swissprot
ID Q9SZL8
description Protein FAR1-RELATED SEQUENCE 5 OS=Arabidopsis thaliana GN=FRS5 PE=2 SV=1
trembl
ID A0A067LI07
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10765 PE=4 SV=1
Gene Ontology
ID GO:0008270
description protein far1-related sequence 5

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02194: 346453-346767 , PASA_asmbl_02196: 348053-352648 , PASA_asmbl_02197: 348184-348338
cDNA
(Sanger)
(ID:Location)		 007_O24.ab1: 348055-348952 , 036_M20.ab1: 348059-348861 , 051_B15.ab1: 348055-348874

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000107_490 0.0 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5 [Jatropha curcas]
2 Hb_000245_040 0.052917905 - - PREDICTED: uncharacterized protein LOC105631550 isoform X2 [Jatropha curcas]
3 Hb_000890_210 0.0578690353 - - PREDICTED: serine/threonine-protein kinase PBS1 isoform X1 [Eucalyptus grandis]
4 Hb_000111_290 0.0598210973 - - PREDICTED: E3 ubiquitin-protein ligase KEG [Jatropha curcas]
5 Hb_010174_110 0.0648291626 - - hypothetical protein JCGZ_17880 [Jatropha curcas]
6 Hb_003370_030 0.06755724 - - PREDICTED: uncharacterized protein LOC105635547 isoform X2 [Jatropha curcas]
7 Hb_004724_150 0.0687609899 - - expressed protein, putative [Ricinus communis]
8 Hb_000590_050 0.069069613 - - PREDICTED: protein-tyrosine-phosphatase MKP1 [Jatropha curcas]
9 Hb_001341_170 0.069296331 - - PREDICTED: general transcription factor IIH subunit 2 [Jatropha curcas]
10 Hb_000317_370 0.069784599 transcription factor TF Family: PHD PREDICTED: PHD finger protein At1g33420-like [Jatropha curcas]
11 Hb_003494_020 0.0699342537 - - ATP-dependent RNA and DNA helicase, putative [Ricinus communis]
12 Hb_000083_120 0.070874945 - - transcription factor, putative [Ricinus communis]
13 Hb_001217_050 0.0713880927 - - actin binding protein, putative [Ricinus communis]
14 Hb_033772_030 0.0721999083 - - PREDICTED: CST complex subunit CTC1 [Jatropha curcas]
15 Hb_007163_120 0.0727190324 - - PREDICTED: COMPASS-like H3K4 histone methylase component WDR5A [Jatropha curcas]
16 Hb_000002_010 0.0730190662 - - PREDICTED: uncharacterized protein LOC105641567 [Jatropha curcas]
17 Hb_003253_040 0.0733697637 - - PREDICTED: uncharacterized protein At5g41620 [Jatropha curcas]
18 Hb_004324_130 0.0735484167 - - polypyrimidine tract binding protein, putative [Ricinus communis]
19 Hb_012490_080 0.0735596931 - - threonine synthase, putative [Ricinus communis]
20 Hb_004117_310 0.0741653125 - - PREDICTED: uncharacterized protein LOC105648043 [Jatropha curcas]

Gene co-expression network

sample Hb_000107_490 Hb_000107_490 Hb_000245_040 Hb_000245_040 Hb_000107_490--Hb_000245_040 Hb_000890_210 Hb_000890_210 Hb_000107_490--Hb_000890_210 Hb_000111_290 Hb_000111_290 Hb_000107_490--Hb_000111_290 Hb_010174_110 Hb_010174_110 Hb_000107_490--Hb_010174_110 Hb_003370_030 Hb_003370_030 Hb_000107_490--Hb_003370_030 Hb_004724_150 Hb_004724_150 Hb_000107_490--Hb_004724_150 Hb_000297_010 Hb_000297_010 Hb_000245_040--Hb_000297_010 Hb_000866_170 Hb_000866_170 Hb_000245_040--Hb_000866_170 Hb_000245_040--Hb_004724_150 Hb_006938_080 Hb_006938_080 Hb_000245_040--Hb_006938_080 Hb_000245_040--Hb_000890_210 Hb_001341_170 Hb_001341_170 Hb_000890_210--Hb_001341_170 Hb_002213_070 Hb_002213_070 Hb_000890_210--Hb_002213_070 Hb_000083_120 Hb_000083_120 Hb_000890_210--Hb_000083_120 Hb_004117_310 Hb_004117_310 Hb_000890_210--Hb_004117_310 Hb_001417_030 Hb_001417_030 Hb_000111_290--Hb_001417_030 Hb_004324_130 Hb_004324_130 Hb_000111_290--Hb_004324_130 Hb_002456_010 Hb_002456_010 Hb_000111_290--Hb_002456_010 Hb_003913_070 Hb_003913_070 Hb_000111_290--Hb_003913_070 Hb_000614_240 Hb_000614_240 Hb_000111_290--Hb_000614_240 Hb_001999_310 Hb_001999_310 Hb_000111_290--Hb_001999_310 Hb_002740_110 Hb_002740_110 Hb_010174_110--Hb_002740_110 Hb_003253_040 Hb_003253_040 Hb_010174_110--Hb_003253_040 Hb_000002_010 Hb_000002_010 Hb_010174_110--Hb_000002_010 Hb_004143_130 Hb_004143_130 Hb_010174_110--Hb_004143_130 Hb_004994_220 Hb_004994_220 Hb_010174_110--Hb_004994_220 Hb_007163_120 Hb_007163_120 Hb_003370_030--Hb_007163_120 Hb_001114_140 Hb_001114_140 Hb_003370_030--Hb_001114_140 Hb_005000_260 Hb_005000_260 Hb_003370_030--Hb_005000_260 Hb_033772_030 Hb_033772_030 Hb_003370_030--Hb_033772_030 Hb_001266_100 Hb_001266_100 Hb_003370_030--Hb_001266_100 Hb_003464_090 Hb_003464_090 Hb_003370_030--Hb_003464_090 Hb_004724_150--Hb_000297_010 Hb_004724_150--Hb_001341_170 Hb_000028_180 Hb_000028_180 Hb_004724_150--Hb_000028_180 Hb_000556_160 Hb_000556_160 Hb_004724_150--Hb_000556_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.40732 9.97525 4.01632 7.03737 6.57899 7.67332
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.44371 5.67544 9.43449 9.15347 6.73995

CAGE analysis