Hb_000107_500

Information

Type -
Description -
Location Contig107: 353134-359804
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa003787mg
description hypothetical protein
nr
ID XP_012076018.1
description PREDICTED: protein FAR1-RELATED SEQUENCE 9 [Jatropha curcas]
swissprot
ID Q9SZL7
description Protein FAR1-RELATED SEQUENCE 9 OS=Arabidopsis thaliana GN=FRS9 PE=2 SV=2
trembl
ID A0A067LR07
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10766 PE=4 SV=1
Gene Ontology
ID GO:0008270
description protein far1-related sequence 9

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02198: 353428-357170
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000107_500 0.0 - - PREDICTED: protein FAR1-RELATED SEQUENCE 9 [Jatropha curcas]
2 Hb_000283_070 0.0466013551 - - PREDICTED: T-complex protein 1 subunit delta [Jatropha curcas]
3 Hb_001541_020 0.0531185355 - - PREDICTED: uncharacterized protein At3g49055 [Jatropha curcas]
4 Hb_006831_110 0.06053485 - - PREDICTED: uncharacterized WD repeat-containing protein C2A9.03-like [Jatropha curcas]
5 Hb_000002_040 0.0648761018 - - hypothetical protein JCGZ_01511 [Jatropha curcas]
6 Hb_000510_310 0.0653470347 transcription factor TF Family: bHLH PREDICTED: transcription factor UNE12-like [Jatropha curcas]
7 Hb_000025_360 0.0671653545 - - PREDICTED: protein SMG7 isoform X1 [Jatropha curcas]
8 Hb_022408_010 0.0680700557 - - PREDICTED: protein SUPPRESSOR OF GENE SILENCING 3 [Jatropha curcas]
9 Hb_000244_250 0.0688976344 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 38 isoform X1 [Jatropha curcas]
10 Hb_000320_200 0.0698755794 - - PREDICTED: U3 small nucleolar RNA-associated protein 6 homolog [Jatropha curcas]
11 Hb_002042_140 0.0700307963 - - PREDICTED: uncharacterized protein LOC105647570 [Jatropha curcas]
12 Hb_001797_050 0.0701587965 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 3-like isoform X1 [Jatropha curcas]
13 Hb_002221_050 0.0707461142 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP65 isoform X1 [Jatropha curcas]
14 Hb_009411_010 0.0712717496 - - PREDICTED: uncharacterized protein LOC105645272 [Jatropha curcas]
15 Hb_003531_060 0.0721710118 - - unnamed protein product [Coffea canephora]
16 Hb_000077_230 0.0723779561 - - PREDICTED: uncharacterized protein LOC105646947 [Jatropha curcas]
17 Hb_005532_050 0.0730283279 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Jatropha curcas]
18 Hb_009620_050 0.0732267555 - - PREDICTED: protein unc-45 homolog A [Jatropha curcas]
19 Hb_000101_240 0.0738401521 desease resistance Gene Name: NB-ARC putative disease resistance gene NBS-LRR family protein [Populus trichocarpa]
20 Hb_001680_010 0.0739642864 - - Serine/threonine protein kinase SAPK3 [Medicago truncatula]

Gene co-expression network

sample Hb_000107_500 Hb_000107_500 Hb_000283_070 Hb_000283_070 Hb_000107_500--Hb_000283_070 Hb_001541_020 Hb_001541_020 Hb_000107_500--Hb_001541_020 Hb_006831_110 Hb_006831_110 Hb_000107_500--Hb_006831_110 Hb_000002_040 Hb_000002_040 Hb_000107_500--Hb_000002_040 Hb_000510_310 Hb_000510_310 Hb_000107_500--Hb_000510_310 Hb_000025_360 Hb_000025_360 Hb_000107_500--Hb_000025_360 Hb_000645_120 Hb_000645_120 Hb_000283_070--Hb_000645_120 Hb_000283_070--Hb_006831_110 Hb_002255_050 Hb_002255_050 Hb_000283_070--Hb_002255_050 Hb_003428_070 Hb_003428_070 Hb_000283_070--Hb_003428_070 Hb_001797_050 Hb_001797_050 Hb_000283_070--Hb_001797_050 Hb_022408_010 Hb_022408_010 Hb_001541_020--Hb_022408_010 Hb_002221_050 Hb_002221_050 Hb_001541_020--Hb_002221_050 Hb_000244_250 Hb_000244_250 Hb_001541_020--Hb_000244_250 Hb_004162_280 Hb_004162_280 Hb_001541_020--Hb_004162_280 Hb_002301_220 Hb_002301_220 Hb_001541_020--Hb_002301_220 Hb_000071_030 Hb_000071_030 Hb_006831_110--Hb_000071_030 Hb_002042_140 Hb_002042_140 Hb_006831_110--Hb_002042_140 Hb_005321_020 Hb_005321_020 Hb_006831_110--Hb_005321_020 Hb_009620_050 Hb_009620_050 Hb_006831_110--Hb_009620_050 Hb_000002_040--Hb_002042_140 Hb_000794_050 Hb_000794_050 Hb_000002_040--Hb_000794_050 Hb_003609_030 Hb_003609_030 Hb_000002_040--Hb_003609_030 Hb_000617_240 Hb_000617_240 Hb_000002_040--Hb_000617_240 Hb_000139_090 Hb_000139_090 Hb_000002_040--Hb_000139_090 Hb_006252_020 Hb_006252_020 Hb_000510_310--Hb_006252_020 Hb_000417_160 Hb_000417_160 Hb_000510_310--Hb_000417_160 Hb_000046_010 Hb_000046_010 Hb_000510_310--Hb_000046_010 Hb_000567_010 Hb_000567_010 Hb_000510_310--Hb_000567_010 Hb_000510_310--Hb_000645_120 Hb_045793_010 Hb_045793_010 Hb_000025_360--Hb_045793_010 Hb_002188_110 Hb_002188_110 Hb_000025_360--Hb_002188_110 Hb_000025_360--Hb_000046_010 Hb_001718_090 Hb_001718_090 Hb_000025_360--Hb_001718_090 Hb_183963_030 Hb_183963_030 Hb_000025_360--Hb_183963_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
25.8894 20.3419 7.13029 10.3775 24.1914 26.3147
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.1653 10.6217 17.1218 12.4716 9.96632

CAGE analysis