Hb_000107_530

Information

Type -
Description -
Location Contig107: 377070-384422
Sequence    

Annotation

kegg
ID rcu:RCOM_1386570
description calcium-dependent protein kinase, putative (EC:2.7.11.17)
nr
ID XP_002520611.1
description calcium-dependent protein kinase, putative [Ricinus communis]
swissprot
ID A5A7I7
description Calcium-dependent protein kinase 4 OS=Solanum tuberosum GN=CPK4 PE=2 SV=1
trembl
ID B9S3P2
description Calcium-dependent protein kinase, putative OS=Ricinus communis GN=RCOM_1386570 PE=4 SV=1
Gene Ontology
ID GO:0004672
description calcium-dependent protein kinase 26-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02200: 377268-384417
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000107_530 0.0 - - calcium-dependent protein kinase, putative [Ricinus communis]
2 Hb_000313_340 0.0753775851 - - DNA repair protein xp-E, putative [Ricinus communis]
3 Hb_007885_070 0.0755041484 - - cleavage and polyadenylation specificity factor, putative [Ricinus communis]
4 Hb_000320_380 0.076011576 - - PREDICTED: uncharacterized protein LOC105649330 isoform X2 [Jatropha curcas]
5 Hb_000417_160 0.0842163804 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At5g45780 [Jatropha curcas]
6 Hb_002221_050 0.0867475626 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP65 isoform X1 [Jatropha curcas]
7 Hb_015026_050 0.088486458 - - XPA-binding protein, putative [Ricinus communis]
8 Hb_140049_020 0.0900620439 - - PREDICTED: cell division cycle protein 73 [Jatropha curcas]
9 Hb_000510_310 0.0908852988 transcription factor TF Family: bHLH PREDICTED: transcription factor UNE12-like [Jatropha curcas]
10 Hb_020665_030 0.0909108996 - - conserved hypothetical protein [Ricinus communis]
11 Hb_019153_020 0.0924925803 - - PREDICTED: KH domain-containing protein At4g18375 isoform X2 [Jatropha curcas]
12 Hb_000465_170 0.0934447465 transcription factor TF Family: MYB-related PREDICTED: transcription factor MYB1R1 [Jatropha curcas]
13 Hb_000021_040 0.0945414176 - - PREDICTED: villin-3-like isoform X1 [Populus euphratica]
14 Hb_175338_020 0.0952243451 - - PREDICTED: uncharacterized protein LOC105648065 [Jatropha curcas]
15 Hb_002255_050 0.0973730066 - - PREDICTED: probable isoleucine--tRNA ligase, cytoplasmic [Jatropha curcas]
16 Hb_000365_140 0.0975919286 - - PREDICTED: ethanolamine-phosphate cytidylyltransferase [Jatropha curcas]
17 Hb_000329_130 0.0978741199 - - beta-tubulin cofactor d, putative [Ricinus communis]
18 Hb_003847_120 0.0987861701 - - WD-repeat protein, putative [Ricinus communis]
19 Hb_001083_030 0.0999105072 - - PREDICTED: probable E3 ubiquitin ligase complex SCF subunit sconB [Jatropha curcas]
20 Hb_002066_080 0.1001978542 - - PREDICTED: protein CYPRO4 [Jatropha curcas]

Gene co-expression network

sample Hb_000107_530 Hb_000107_530 Hb_000313_340 Hb_000313_340 Hb_000107_530--Hb_000313_340 Hb_007885_070 Hb_007885_070 Hb_000107_530--Hb_007885_070 Hb_000320_380 Hb_000320_380 Hb_000107_530--Hb_000320_380 Hb_000417_160 Hb_000417_160 Hb_000107_530--Hb_000417_160 Hb_002221_050 Hb_002221_050 Hb_000107_530--Hb_002221_050 Hb_015026_050 Hb_015026_050 Hb_000107_530--Hb_015026_050 Hb_140049_020 Hb_140049_020 Hb_000313_340--Hb_140049_020 Hb_001946_300 Hb_001946_300 Hb_000313_340--Hb_001946_300 Hb_000313_340--Hb_007885_070 Hb_004899_070 Hb_004899_070 Hb_000313_340--Hb_004899_070 Hb_000261_290 Hb_000261_290 Hb_000313_340--Hb_000261_290 Hb_000363_130 Hb_000363_130 Hb_000313_340--Hb_000363_130 Hb_007885_070--Hb_002221_050 Hb_007885_070--Hb_000417_160 Hb_000529_260 Hb_000529_260 Hb_007885_070--Hb_000529_260 Hb_019153_020 Hb_019153_020 Hb_007885_070--Hb_019153_020 Hb_007885_070--Hb_000320_380 Hb_000424_010 Hb_000424_010 Hb_007885_070--Hb_000424_010 Hb_000320_380--Hb_015026_050 Hb_000320_380--Hb_002221_050 Hb_000320_380--Hb_019153_020 Hb_000320_380--Hb_140049_020 Hb_000574_440 Hb_000574_440 Hb_000320_380--Hb_000574_440 Hb_000417_160--Hb_019153_020 Hb_000510_310 Hb_000510_310 Hb_000417_160--Hb_000510_310 Hb_147737_010 Hb_147737_010 Hb_000417_160--Hb_147737_010 Hb_000417_160--Hb_002221_050 Hb_000329_130 Hb_000329_130 Hb_000417_160--Hb_000329_130 Hb_002221_050--Hb_000424_010 Hb_002221_050--Hb_000529_260 Hb_000320_200 Hb_000320_200 Hb_002221_050--Hb_000320_200 Hb_002221_050--Hb_015026_050 Hb_015026_050--Hb_147737_010 Hb_015026_050--Hb_000329_130 Hb_015026_050--Hb_007885_070 Hb_003847_120 Hb_003847_120 Hb_015026_050--Hb_003847_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
67.6247 56.3425 29.5201 27.7424 102.449 74.8242
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
17.102 22.3523 42.0393 29.9727 22.3152

CAGE analysis