Hb_000107_540

Information

Type -
Description -
Location Contig107: 384962-389794
Sequence    

Annotation

kegg
ID pop:POPTR_0004s21720g
description hypothetical protein
nr
ID XP_012073830.1
description PREDICTED: uncharacterized protein LOC105635335 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067LHY5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10740 PE=4 SV=1
Gene Ontology
ID GO:0009507
description glycerol kinase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02201: 384894-389851
cDNA
(Sanger)
(ID:Location)		 024_N06.ab1: 389340-389834

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000107_540 0.0 - - PREDICTED: uncharacterized protein LOC105635335 [Jatropha curcas]
2 Hb_001517_010 0.0812117588 - - conserved hypothetical protein [Ricinus communis]
3 Hb_002333_040 0.0838726868 - - hypothetical protein CISIN_1g015895mg [Citrus sinensis]
4 Hb_001584_050 0.0872622132 - - PREDICTED: NHL repeat-containing protein 2 isoform X1 [Jatropha curcas]
5 Hb_005348_120 0.0904701329 - - PREDICTED: chlorophyll a-b binding protein, chloroplastic [Jatropha curcas]
6 Hb_000679_320 0.0954862988 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105136146 [Populus euphratica]
7 Hb_004162_250 0.0968207298 - - hypothetical protein POPTR_0004s22660g [Populus trichocarpa]
8 Hb_006915_010 0.0973880992 - - PREDICTED: clustered mitochondria protein homolog [Jatropha curcas]
9 Hb_010080_070 0.0989021825 - - PREDICTED: ATP-dependent zinc metalloprotease FTSH, chloroplastic [Jatropha curcas]
10 Hb_001691_180 0.0989761858 - - phosphoglycerate mutase, putative [Ricinus communis]
11 Hb_001377_210 0.1016547046 - - PREDICTED: clustered mitochondria protein homolog [Jatropha curcas]
12 Hb_005523_040 0.1040141274 - - PREDICTED: uncharacterized protein LOC100253680 [Vitis vinifera]
13 Hb_156850_020 0.1085572203 - - ATP-dependent zinc metalloprotease FTSH 1, chloroplastic [Glycine soja]
14 Hb_163950_040 0.1116486104 - - PREDICTED: putative 4-hydroxy-tetrahydrodipicolinate reductase 3, chloroplastic [Jatropha curcas]
15 Hb_003171_040 0.1135062489 - - multidrug resistance pump, putative [Ricinus communis]
16 Hb_000041_250 0.1140616422 - - PREDICTED: uncharacterized protein LOC105641253 [Jatropha curcas]
17 Hb_000856_280 0.1223327152 - - PREDICTED: uncharacterized protein LOC105640491 [Jatropha curcas]
18 Hb_000011_440 0.1233262137 - - PREDICTED: GDSL esterase/lipase 1 [Populus euphratica]
19 Hb_011900_020 0.123517526 - - PREDICTED: pentatricopeptide repeat-containing protein At4g16390, chloroplastic [Jatropha curcas]
20 Hb_000017_210 0.1245606261 - - PREDICTED: homeobox protein BEL1 homolog [Populus euphratica]

Gene co-expression network

sample Hb_000107_540 Hb_000107_540 Hb_001517_010 Hb_001517_010 Hb_000107_540--Hb_001517_010 Hb_002333_040 Hb_002333_040 Hb_000107_540--Hb_002333_040 Hb_001584_050 Hb_001584_050 Hb_000107_540--Hb_001584_050 Hb_005348_120 Hb_005348_120 Hb_000107_540--Hb_005348_120 Hb_000679_320 Hb_000679_320 Hb_000107_540--Hb_000679_320 Hb_004162_250 Hb_004162_250 Hb_000107_540--Hb_004162_250 Hb_001195_290 Hb_001195_290 Hb_001517_010--Hb_001195_290 Hb_005523_040 Hb_005523_040 Hb_001517_010--Hb_005523_040 Hb_134949_010 Hb_134949_010 Hb_001517_010--Hb_134949_010 Hb_001584_210 Hb_001584_210 Hb_001517_010--Hb_001584_210 Hb_001691_180 Hb_001691_180 Hb_001517_010--Hb_001691_180 Hb_002333_040--Hb_005348_120 Hb_000009_470 Hb_000009_470 Hb_002333_040--Hb_000009_470 Hb_002333_040--Hb_001584_210 Hb_000017_210 Hb_000017_210 Hb_002333_040--Hb_000017_210 Hb_000694_080 Hb_000694_080 Hb_002333_040--Hb_000694_080 Hb_010080_070 Hb_010080_070 Hb_001584_050--Hb_010080_070 Hb_001377_210 Hb_001377_210 Hb_001584_050--Hb_001377_210 Hb_001584_050--Hb_002333_040 Hb_001257_110 Hb_001257_110 Hb_001584_050--Hb_001257_110 Hb_000011_440 Hb_000011_440 Hb_001584_050--Hb_000011_440 Hb_005348_120--Hb_004162_250 Hb_000041_250 Hb_000041_250 Hb_005348_120--Hb_000041_250 Hb_005348_120--Hb_005523_040 Hb_006970_030 Hb_006970_030 Hb_005348_120--Hb_006970_030 Hb_004979_050 Hb_004979_050 Hb_000679_320--Hb_004979_050 Hb_009393_140 Hb_009393_140 Hb_000679_320--Hb_009393_140 Hb_006472_040 Hb_006472_040 Hb_000679_320--Hb_006472_040 Hb_000359_160 Hb_000359_160 Hb_000679_320--Hb_000359_160 Hb_008112_020 Hb_008112_020 Hb_000679_320--Hb_008112_020 Hb_004162_250--Hb_000041_250 Hb_006915_010 Hb_006915_010 Hb_004162_250--Hb_006915_010 Hb_004162_250--Hb_002333_040 Hb_004162_250--Hb_001517_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.188352 1.11698 7.42416 3.79564 0.170068 0.175397
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.240308 0.315052 0.117281 1.67821 23.6171

CAGE analysis