Hb_000107_620

Information

Type -
Description -
Location Contig107: 480788-487140
Sequence    

Annotation

kegg
ID pop:POPTR_0010s17780g
description POPTRDRAFT_881806; zinc finger family protein
nr
ID XP_012089643.1
description PREDICTED: transcription initiation factor TFIID subunit 15 [Jatropha curcas]
swissprot
ID Q9AST1
description Transcription initiation factor TFIID subunit 15 OS=Arabidopsis thaliana GN=TAF15 PE=1 SV=1
trembl
ID A0A067JGB5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01663 PE=4 SV=1
Gene Ontology
ID GO:0000166
description transcription initiation factor tfiid subunit 15

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02220: 480868-481250 , PASA_asmbl_02221: 481377-487028 , PASA_asmbl_02223: 483299-483452 , PASA_asmbl_02224: 482202-487023 , PASA_asmbl_02225: 482231-486104
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000107_620 0.0 - - PREDICTED: transcription initiation factor TFIID subunit 15 [Jatropha curcas]
2 Hb_009838_080 0.0608510551 - - Ras-GTPase-activating protein-binding protein, putative [Ricinus communis]
3 Hb_002205_070 0.0623806221 - - PREDICTED: tRNA (guanine(26)-N(2))-dimethyltransferase isoform X1 [Jatropha curcas]
4 Hb_118707_030 0.0665451643 - - PREDICTED: mediator of RNA polymerase II transcription subunit 19a-like isoform X1 [Beta vulgaris subsp. vulgaris]
5 Hb_006400_030 0.0715507369 - - hypothetical protein OsI_01237 [Oryza sativa Indica Group]
6 Hb_011571_010 0.0737917676 - - Metal tolerance protein C4, putative [Ricinus communis]
7 Hb_002942_190 0.0751858344 - - poly(A) polymerase, putative [Ricinus communis]
8 Hb_002027_250 0.078286192 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
9 Hb_017904_010 0.0787081198 - - PREDICTED: DNA repair protein recA homolog 2, mitochondrial [Jatropha curcas]
10 Hb_002963_020 0.0790815675 - - conserved hypothetical protein [Ricinus communis]
11 Hb_003032_040 0.0797070158 - - PREDICTED: LOW QUALITY PROTEIN: zinc finger CCCH domain-containing protein 25 [Jatropha curcas]
12 Hb_000808_230 0.080015797 - - PREDICTED: peptide chain release factor PrfB2, chloroplastic [Jatropha curcas]
13 Hb_002876_110 0.0803704135 - - conserved hypothetical protein [Ricinus communis]
14 Hb_001545_120 0.0811221921 - - PREDICTED: pentatricopeptide repeat-containing protein At1g34160 [Jatropha curcas]
15 Hb_000483_200 0.0811496449 - - Phospho-2-dehydro-3-deoxyheptonate aldolase 1, chloroplast precursor, putative [Ricinus communis]
16 Hb_006332_020 0.0815383854 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At5g10290 [Jatropha curcas]
17 Hb_002044_080 0.0823199279 - - PREDICTED: secretion-regulating guanine nucleotide exchange factor isoform X2 [Jatropha curcas]
18 Hb_002214_040 0.0824740396 - - PREDICTED: tryptophan--tRNA ligase, cytoplasmic [Jatropha curcas]
19 Hb_000236_070 0.0825891272 - - conserved hypothetical protein [Ricinus communis]
20 Hb_006400_060 0.082910951 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 31 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000107_620 Hb_000107_620 Hb_009838_080 Hb_009838_080 Hb_000107_620--Hb_009838_080 Hb_002205_070 Hb_002205_070 Hb_000107_620--Hb_002205_070 Hb_118707_030 Hb_118707_030 Hb_000107_620--Hb_118707_030 Hb_006400_030 Hb_006400_030 Hb_000107_620--Hb_006400_030 Hb_011571_010 Hb_011571_010 Hb_000107_620--Hb_011571_010 Hb_002942_190 Hb_002942_190 Hb_000107_620--Hb_002942_190 Hb_002214_040 Hb_002214_040 Hb_009838_080--Hb_002214_040 Hb_004254_120 Hb_004254_120 Hb_009838_080--Hb_004254_120 Hb_002477_070 Hb_002477_070 Hb_009838_080--Hb_002477_070 Hb_002609_020 Hb_002609_020 Hb_009838_080--Hb_002609_020 Hb_153112_020 Hb_153112_020 Hb_009838_080--Hb_153112_020 Hb_002205_070--Hb_118707_030 Hb_002205_070--Hb_009838_080 Hb_000236_070 Hb_000236_070 Hb_002205_070--Hb_000236_070 Hb_017904_010 Hb_017904_010 Hb_002205_070--Hb_017904_010 Hb_006541_030 Hb_006541_030 Hb_002205_070--Hb_006541_030 Hb_118707_030--Hb_002214_040 Hb_011689_080 Hb_011689_080 Hb_118707_030--Hb_011689_080 Hb_000815_040 Hb_000815_040 Hb_118707_030--Hb_000815_040 Hb_000656_400 Hb_000656_400 Hb_118707_030--Hb_000656_400 Hb_000483_200 Hb_000483_200 Hb_006400_030--Hb_000483_200 Hb_003032_040 Hb_003032_040 Hb_006400_030--Hb_003032_040 Hb_006400_060 Hb_006400_060 Hb_006400_030--Hb_006400_060 Hb_005618_170 Hb_005618_170 Hb_006400_030--Hb_005618_170 Hb_003976_010 Hb_003976_010 Hb_006400_030--Hb_003976_010 Hb_007317_210 Hb_007317_210 Hb_011571_010--Hb_007317_210 Hb_112798_030 Hb_112798_030 Hb_011571_010--Hb_112798_030 Hb_006332_020 Hb_006332_020 Hb_011571_010--Hb_006332_020 Hb_001811_050 Hb_001811_050 Hb_011571_010--Hb_001811_050 Hb_011571_010--Hb_006541_030 Hb_026549_040 Hb_026549_040 Hb_002942_190--Hb_026549_040 Hb_002942_190--Hb_000656_400 Hb_008221_140 Hb_008221_140 Hb_002942_190--Hb_008221_140 Hb_001292_020 Hb_001292_020 Hb_002942_190--Hb_001292_020 Hb_002044_080 Hb_002044_080 Hb_002942_190--Hb_002044_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
25.3112 9.89325 9.25778 6.45845 22.2425 24.4873
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
26.7861 27.6945 24.7052 13.7656 15.3982

CAGE analysis