Hb_000107_690

Information

Type -
Description -
Location Contig107: 554224-555294
Sequence    

Annotation

kegg
ID rcu:RCOM_1252930
description zinc finger protein, putative
nr
ID XP_002522289.1
description zinc finger protein, putative [Ricinus communis]
swissprot
ID Q9C7N5
description GDSL esterase/lipase At1g29660 OS=Arabidopsis thaliana GN=At1g29660 PE=2 SV=1
trembl
ID B9S8H0
description Zinc finger protein, putative OS=Ricinus communis GN=RCOM_1252930 PE=4 SV=1
Gene Ontology
ID GO:0016788
description zinc finger

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02230: 553874-554434 , PASA_asmbl_02231: 554014-554627 , PASA_asmbl_02232: 554723-555360
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000107_690 0.0 - - zinc finger protein, putative [Ricinus communis]
2 Hb_003251_020 0.000232421 - - Serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit B [Gossypium arboreum]
3 Hb_158909_010 0.0009535112 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
4 Hb_037000_010 0.0039448191 - - PREDICTED: putative germin-like protein 2-1 [Jatropha curcas]
5 Hb_086639_110 0.0042446601 transcription factor TF Family: G2-like DNA binding protein, putative [Theobroma cacao]
6 Hb_000330_010 0.0043976871 - - hypothetical protein POPTR_0005s25020g [Populus trichocarpa]
7 Hb_004957_040 0.0057856132 - - PREDICTED: uncharacterized protein LOC104890338 [Beta vulgaris subsp. vulgaris]
8 Hb_000134_140 0.0091141903 - - lipid binding protein, putative [Ricinus communis]
9 Hb_000130_430 0.0093535482 - - PREDICTED: UDP-glycosyltransferase 79B6-like [Jatropha curcas]
10 Hb_001136_150 0.0100769462 - - conserved hypothetical protein [Ricinus communis]
11 Hb_001248_160 0.0137022023 transcription factor TF Family: C2H2 TRANSPARENT TESTA 1 protein, putative [Ricinus communis]
12 Hb_131748_010 0.017362719 - - hypothetical protein PRUPE_ppa022115mg [Prunus persica]
13 Hb_163180_010 0.017624766 - - hypothetical protein JCGZ_26658 [Jatropha curcas]
14 Hb_001926_060 0.0187282288 - - PREDICTED: uncharacterized protein LOC105649615 isoform X2 [Jatropha curcas]
15 Hb_007058_020 0.0197071455 - - -
16 Hb_000340_170 0.0231596618 - - PREDICTED: GDSL esterase/lipase At1g54790-like [Jatropha curcas]
17 Hb_156212_010 0.0232445749 - - PREDICTED: putative receptor-like protein kinase At3g47110 [Jatropha curcas]
18 Hb_000002_020 0.0240009111 - - PREDICTED: ALA-interacting subunit 3-like [Jatropha curcas]
19 Hb_004918_020 0.0256625903 - - -
20 Hb_003018_220 0.0259849883 - - Snakin-2 [Gossypium arboreum]

Gene co-expression network

sample Hb_000107_690 Hb_000107_690 Hb_003251_020 Hb_003251_020 Hb_000107_690--Hb_003251_020 Hb_158909_010 Hb_158909_010 Hb_000107_690--Hb_158909_010 Hb_037000_010 Hb_037000_010 Hb_000107_690--Hb_037000_010 Hb_086639_110 Hb_086639_110 Hb_000107_690--Hb_086639_110 Hb_000330_010 Hb_000330_010 Hb_000107_690--Hb_000330_010 Hb_004957_040 Hb_004957_040 Hb_000107_690--Hb_004957_040 Hb_003251_020--Hb_158909_010 Hb_003251_020--Hb_037000_010 Hb_003251_020--Hb_086639_110 Hb_003251_020--Hb_000330_010 Hb_003251_020--Hb_004957_040 Hb_158909_010--Hb_037000_010 Hb_158909_010--Hb_004957_040 Hb_158909_010--Hb_086639_110 Hb_158909_010--Hb_000330_010 Hb_037000_010--Hb_004957_040 Hb_000134_140 Hb_000134_140 Hb_037000_010--Hb_000134_140 Hb_037000_010--Hb_086639_110 Hb_086639_110--Hb_000330_010 Hb_000130_430 Hb_000130_430 Hb_086639_110--Hb_000130_430 Hb_001136_150 Hb_001136_150 Hb_086639_110--Hb_001136_150 Hb_000330_010--Hb_000130_430 Hb_000330_010--Hb_001136_150 Hb_004957_040--Hb_000134_140 Hb_004957_040--Hb_086639_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 1.33358 5.55419 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis