Hb_000108_040

Information

Type -
Description -
Location Contig108: 35005-38143
Sequence    

Annotation

kegg
ID tcc:TCM_044848
description Leucine-rich repeat receptor-like protein kinase family protein, putative
nr
ID XP_012442669.1
description PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 [Gossypium raimondii]
swissprot
ID Q8VZG8
description Probable LRR receptor-like serine/threonine-protein kinase At4g08850 OS=Arabidopsis thaliana GN=At4g08850 PE=2 SV=3
trembl
ID A0A0D2Q9T3
description Gossypium raimondii chromosome 9, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_009G056800 PE=4 SV=1
Gene Ontology
ID GO:0016772
description probable lrr receptor-like serine threonine-protein kinase at4g08850

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000108_040 0.0 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 [Gossypium raimondii]
2 Hb_002044_110 0.1657855448 - - PREDICTED: probable carboxylesterase 5 isoform X1 [Populus euphratica]
3 Hb_001628_030 0.1783274245 - - PREDICTED: uncharacterized protein LOC105629266 isoform X1 [Jatropha curcas]
4 Hb_004544_010 0.1793530394 - - PREDICTED: cytochrome P450 CYP749A22-like [Jatropha curcas]
5 Hb_004631_100 0.1819096659 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH96 [Jatropha curcas]
6 Hb_004785_160 0.1819235728 - - PREDICTED: U-box domain-containing protein 28-like [Jatropha curcas]
7 Hb_008725_030 0.1860856768 - - conserved hypothetical protein [Ricinus communis]
8 Hb_003968_010 0.1886892567 - - UDP-glucosyltransferase, putative [Ricinus communis]
9 Hb_036356_010 0.1891120954 transcription factor TF Family: NAC transcription factor, putative [Ricinus communis]
10 Hb_003050_170 0.1891935654 - - conserved hypothetical protein [Ricinus communis]
11 Hb_003712_010 0.1908785164 - - protein binding protein, putative [Ricinus communis]
12 Hb_004218_220 0.193081708 - - o-methyltransferase, putative [Ricinus communis]
13 Hb_070634_010 0.1962947916 - - TMV resistance protein N, putative [Ricinus communis]
14 Hb_000007_380 0.1983405888 - - Disease resistance family protein / LRR family protein, putative [Theobroma cacao]
15 Hb_002035_020 0.198560322 transcription factor TF Family: TRAF hypothetical protein B456_011G050200 [Gossypium raimondii]
16 Hb_032050_070 0.1986451378 - - PREDICTED: peroxidase 12-like [Jatropha curcas]
17 Hb_043522_010 0.1992947134 - - -
18 Hb_001019_140 0.2006731923 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
19 Hb_000509_090 0.2006967474 - - Reticuline oxidase precursor, putative [Ricinus communis]
20 Hb_004096_140 0.2012630915 - - Lipase, putative [Ricinus communis]

Gene co-expression network

sample Hb_000108_040 Hb_000108_040 Hb_002044_110 Hb_002044_110 Hb_000108_040--Hb_002044_110 Hb_001628_030 Hb_001628_030 Hb_000108_040--Hb_001628_030 Hb_004544_010 Hb_004544_010 Hb_000108_040--Hb_004544_010 Hb_004631_100 Hb_004631_100 Hb_000108_040--Hb_004631_100 Hb_004785_160 Hb_004785_160 Hb_000108_040--Hb_004785_160 Hb_008725_030 Hb_008725_030 Hb_000108_040--Hb_008725_030 Hb_010614_020 Hb_010614_020 Hb_002044_110--Hb_010614_020 Hb_002217_210 Hb_002217_210 Hb_002044_110--Hb_002217_210 Hb_004218_220 Hb_004218_220 Hb_002044_110--Hb_004218_220 Hb_004635_040 Hb_004635_040 Hb_002044_110--Hb_004635_040 Hb_036356_010 Hb_036356_010 Hb_002044_110--Hb_036356_010 Hb_008959_050 Hb_008959_050 Hb_002044_110--Hb_008959_050 Hb_041145_010 Hb_041145_010 Hb_001628_030--Hb_041145_010 Hb_032050_070 Hb_032050_070 Hb_001628_030--Hb_032050_070 Hb_001628_030--Hb_036356_010 Hb_002049_030 Hb_002049_030 Hb_001628_030--Hb_002049_030 Hb_133845_010 Hb_133845_010 Hb_001628_030--Hb_133845_010 Hb_138705_010 Hb_138705_010 Hb_001628_030--Hb_138705_010 Hb_043522_010 Hb_043522_010 Hb_004544_010--Hb_043522_010 Hb_004544_010--Hb_008725_030 Hb_004544_010--Hb_004785_160 Hb_002973_070 Hb_002973_070 Hb_004544_010--Hb_002973_070 Hb_001971_030 Hb_001971_030 Hb_004544_010--Hb_001971_030 Hb_000110_030 Hb_000110_030 Hb_004544_010--Hb_000110_030 Hb_002676_110 Hb_002676_110 Hb_004631_100--Hb_002676_110 Hb_033053_020 Hb_033053_020 Hb_004631_100--Hb_033053_020 Hb_000060_080 Hb_000060_080 Hb_004631_100--Hb_000060_080 Hb_002888_100 Hb_002888_100 Hb_004631_100--Hb_002888_100 Hb_004659_100 Hb_004659_100 Hb_004631_100--Hb_004659_100 Hb_000111_120 Hb_000111_120 Hb_004631_100--Hb_000111_120 Hb_004785_160--Hb_000110_030 Hb_004785_160--Hb_002973_070 Hb_001141_210 Hb_001141_210 Hb_004785_160--Hb_001141_210 Hb_000031_160 Hb_000031_160 Hb_004785_160--Hb_000031_160 Hb_004785_160--Hb_043522_010 Hb_003968_010 Hb_003968_010 Hb_008725_030--Hb_003968_010 Hb_096974_010 Hb_096974_010 Hb_008725_030--Hb_096974_010 Hb_008725_030--Hb_043522_010 Hb_003050_170 Hb_003050_170 Hb_008725_030--Hb_003050_170 Hb_004297_050 Hb_004297_050 Hb_008725_030--Hb_004297_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0103168 0.063224 0.0623866 0.0676245 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0354661 0

CAGE analysis