Hb_000108_070

Information

Type -
Description -
Location Contig108: 54880-57926
Sequence    

Annotation

kegg
ID rcu:RCOM_1361220
description tubulin alpha chain, putative
nr
ID AGD80034.1
description alpha-tubulin 1 [Hevea brasiliensis]
swissprot
ID B9DHQ0
description Tubulin alpha-5 chain OS=Arabidopsis thaliana GN=TUBA5 PE=1 SV=2
trembl
ID L7XDM4
description Alpha-tubulin 1 OS=Hevea brasiliensis GN=TUA1 PE=2 SV=1
Gene Ontology
ID GO:0005618
description tubulin alpha-3 chain

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02380: 54884-57759
cDNA
(Sanger)
(ID:Location)		 027_J04.ab1: 54895-56572 , 031_K22.ab1: 54892-56610

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000108_070 0.0 - - alpha-tubulin 1 [Hevea brasiliensis]
2 Hb_001014_040 0.0772003177 - - PREDICTED: uncharacterized protein LOC105647308 [Jatropha curcas]
3 Hb_008616_070 0.0910223561 - - PREDICTED: trafficking protein particle complex subunit 8 isoform X1 [Jatropha curcas]
4 Hb_000130_050 0.0916739526 - - 14-3-3 protein, putative [Ricinus communis]
5 Hb_002660_070 0.0957374177 - - PREDICTED: gamma carbonic anhydrase 1, mitochondrial [Eucalyptus grandis]
6 Hb_001811_030 0.1025135968 - - Beta-ureidopropionase, putative [Ricinus communis]
7 Hb_000120_960 0.1048703809 - - isocitrate dehydrogenase, putative [Ricinus communis]
8 Hb_001507_040 0.1059698973 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000592_020 0.1080520266 - - PREDICTED: serine/threonine-protein kinase EDR1 [Jatropha curcas]
10 Hb_000731_260 0.1094491945 - - hypothetical protein RCOM_0905090 [Ricinus communis]
11 Hb_004079_030 0.1101263131 - - PREDICTED: uncharacterized protein LOC105637701 isoform X2 [Jatropha curcas]
12 Hb_003540_030 0.1106934665 - - PREDICTED: ultraviolet-B receptor UVR8 isoform X1 [Jatropha curcas]
13 Hb_000922_390 0.112618931 - - PREDICTED: uncharacterized protein LOC105640364 [Jatropha curcas]
14 Hb_002027_040 0.11320868 - - synapse-associated protein, putative [Ricinus communis]
15 Hb_004705_120 0.1134610205 - - ATP binding protein, putative [Ricinus communis]
16 Hb_006711_060 0.1149994783 - - Tubulin beta-1 chain [Morus notabilis]
17 Hb_000538_070 0.1167433784 - - PREDICTED: coatomer subunit delta [Jatropha curcas]
18 Hb_001096_110 0.1174373681 - - PREDICTED: probable VAMP-like protein At1g33475 [Jatropha curcas]
19 Hb_001080_280 0.1175291029 - - PREDICTED: uncharacterized protein LOC105649981 [Jatropha curcas]
20 Hb_000096_010 0.1187177719 - - PREDICTED: U-box domain-containing protein 30-like [Citrus sinensis]

Gene co-expression network

sample Hb_000108_070 Hb_000108_070 Hb_001014_040 Hb_001014_040 Hb_000108_070--Hb_001014_040 Hb_008616_070 Hb_008616_070 Hb_000108_070--Hb_008616_070 Hb_000130_050 Hb_000130_050 Hb_000108_070--Hb_000130_050 Hb_002660_070 Hb_002660_070 Hb_000108_070--Hb_002660_070 Hb_001811_030 Hb_001811_030 Hb_000108_070--Hb_001811_030 Hb_000120_960 Hb_000120_960 Hb_000108_070--Hb_000120_960 Hb_001014_040--Hb_001811_030 Hb_031862_110 Hb_031862_110 Hb_001014_040--Hb_031862_110 Hb_002005_020 Hb_002005_020 Hb_001014_040--Hb_002005_020 Hb_002374_100 Hb_002374_100 Hb_001014_040--Hb_002374_100 Hb_001014_040--Hb_000130_050 Hb_001507_040 Hb_001507_040 Hb_008616_070--Hb_001507_040 Hb_008616_070--Hb_002660_070 Hb_020805_130 Hb_020805_130 Hb_008616_070--Hb_020805_130 Hb_004705_120 Hb_004705_120 Hb_008616_070--Hb_004705_120 Hb_001904_090 Hb_001904_090 Hb_008616_070--Hb_001904_090 Hb_015778_010 Hb_015778_010 Hb_008616_070--Hb_015778_010 Hb_000096_010 Hb_000096_010 Hb_000130_050--Hb_000096_010 Hb_000538_070 Hb_000538_070 Hb_000130_050--Hb_000538_070 Hb_004079_030 Hb_004079_030 Hb_000130_050--Hb_004079_030 Hb_000161_060 Hb_000161_060 Hb_000130_050--Hb_000161_060 Hb_002660_070--Hb_000120_960 Hb_002660_070--Hb_001507_040 Hb_000086_280 Hb_000086_280 Hb_002660_070--Hb_000086_280 Hb_065525_090 Hb_065525_090 Hb_002660_070--Hb_065525_090 Hb_002660_070--Hb_020805_130 Hb_001811_030--Hb_004079_030 Hb_000922_390 Hb_000922_390 Hb_001811_030--Hb_000922_390 Hb_001811_030--Hb_001507_040 Hb_000445_040 Hb_000445_040 Hb_001811_030--Hb_000445_040 Hb_001811_030--Hb_008616_070 Hb_010407_180 Hb_010407_180 Hb_000120_960--Hb_010407_180 Hb_000120_960--Hb_000086_280 Hb_003540_030 Hb_003540_030 Hb_000120_960--Hb_003540_030 Hb_000120_960--Hb_020805_130 Hb_007044_120 Hb_007044_120 Hb_000120_960--Hb_007044_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
103.31 55.4323 86.9239 129.017 63.175 67.9665
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
178.167 145.153 333.223 122.533 52.8151

CAGE analysis