Hb_000108_140

Information

Type -
Description -
Location Contig108: 117707-119750
Sequence    

Annotation

kegg
ID cic:CICLE_v10019690mg
description hypothetical protein
nr
ID XP_006441362.1
description hypothetical protein CICLE_v10019690mg [Citrus clementina]
swissprot
ID -
description -
trembl
ID V4TME9
description Uncharacterized protein OS=Citrus clementina GN=CICLE_v10019690mg PE=4 SV=1
Gene Ontology
ID GO:0005634
description dna polymerase epsilon subunit 2 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02388: 102388-118752
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000108_140 0.0 - - hypothetical protein CICLE_v10019690mg [Citrus clementina]
2 Hb_000347_200 0.1102651715 - - lsm1, putative [Ricinus communis]
3 Hb_000856_260 0.1120571594 transcription factor TF Family: HB hypothetical protein POPTR_0015s07640g [Populus trichocarpa]
4 Hb_000500_060 0.1147365545 - - BnaC08g21190D [Brassica napus]
5 Hb_001242_110 0.1151617043 - - 40S ribosomal protein S18, putative [Ricinus communis]
6 Hb_004705_100 0.1218479027 - - PREDICTED: inactive leucine-rich repeat receptor-like protein kinase CORYNE [Jatropha curcas]
7 Hb_074979_020 0.1218950985 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
8 Hb_003996_020 0.1236601989 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
9 Hb_000173_340 0.1251239299 - - hypothetical protein JCGZ_02075 [Jatropha curcas]
10 Hb_000684_230 0.1256464169 - - 40S ribosomal protein S23, putative [Ricinus communis]
11 Hb_067776_010 0.1259435426 - - mitochondrial 39S ribosomal protein L53 [Hevea brasiliensis]
12 Hb_006922_110 0.1260269855 - - PREDICTED: probable VAMP-like protein At1g33475 [Jatropha curcas]
13 Hb_003092_030 0.1270197114 - - PREDICTED: calmodulin-binding receptor-like cytoplasmic kinase 3 [Jatropha curcas]
14 Hb_005686_060 0.127278473 - - PREDICTED: uncharacterized protein LOC101508199 [Cicer arietinum]
15 Hb_031042_010 0.1286466818 - - hypothetical protein JCGZ_03409 [Jatropha curcas]
16 Hb_037887_010 0.1299265742 - - Charged multivesicular body protein 2a, putative [Ricinus communis]
17 Hb_004007_100 0.1305075153 - - PREDICTED: 60S ribosomal protein L26-1 [Jatropha curcas]
18 Hb_006909_030 0.1306326331 - - 40S ribosomal protein S17B [Hevea brasiliensis]
19 Hb_180301_010 0.1329520759 - - PREDICTED: uncharacterized protein LOC105647918 isoform X1 [Jatropha curcas]
20 Hb_021238_050 0.1337485374 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000108_140 Hb_000108_140 Hb_000347_200 Hb_000347_200 Hb_000108_140--Hb_000347_200 Hb_000856_260 Hb_000856_260 Hb_000108_140--Hb_000856_260 Hb_000500_060 Hb_000500_060 Hb_000108_140--Hb_000500_060 Hb_001242_110 Hb_001242_110 Hb_000108_140--Hb_001242_110 Hb_004705_100 Hb_004705_100 Hb_000108_140--Hb_004705_100 Hb_074979_020 Hb_074979_020 Hb_000108_140--Hb_074979_020 Hb_000173_340 Hb_000173_340 Hb_000347_200--Hb_000173_340 Hb_000700_110 Hb_000700_110 Hb_000347_200--Hb_000700_110 Hb_006198_080 Hb_006198_080 Hb_000347_200--Hb_006198_080 Hb_003092_030 Hb_003092_030 Hb_000347_200--Hb_003092_030 Hb_012305_050 Hb_012305_050 Hb_000347_200--Hb_012305_050 Hb_000024_080 Hb_000024_080 Hb_000347_200--Hb_000024_080 Hb_000898_050 Hb_000898_050 Hb_000856_260--Hb_000898_050 Hb_000224_120 Hb_000224_120 Hb_000856_260--Hb_000224_120 Hb_006429_010 Hb_006429_010 Hb_000856_260--Hb_006429_010 Hb_180301_010 Hb_180301_010 Hb_000856_260--Hb_180301_010 Hb_000635_150 Hb_000635_150 Hb_000856_260--Hb_000635_150 Hb_000856_260--Hb_074979_020 Hb_031042_010 Hb_031042_010 Hb_000500_060--Hb_031042_010 Hb_007441_270 Hb_007441_270 Hb_000500_060--Hb_007441_270 Hb_000196_050 Hb_000196_050 Hb_000500_060--Hb_000196_050 Hb_002701_050 Hb_002701_050 Hb_000500_060--Hb_002701_050 Hb_000199_070 Hb_000199_070 Hb_000500_060--Hb_000199_070 Hb_148209_080 Hb_148209_080 Hb_001242_110--Hb_148209_080 Hb_000028_140 Hb_000028_140 Hb_001242_110--Hb_000028_140 Hb_003996_020 Hb_003996_020 Hb_001242_110--Hb_003996_020 Hb_000227_230 Hb_000227_230 Hb_001242_110--Hb_000227_230 Hb_015175_030 Hb_015175_030 Hb_001242_110--Hb_015175_030 Hb_027073_040 Hb_027073_040 Hb_001242_110--Hb_027073_040 Hb_005686_060 Hb_005686_060 Hb_004705_100--Hb_005686_060 Hb_092337_010 Hb_092337_010 Hb_004705_100--Hb_092337_010 Hb_010172_080 Hb_010172_080 Hb_004705_100--Hb_010172_080 Hb_004705_100--Hb_000700_110 Hb_000692_220 Hb_000692_220 Hb_004705_100--Hb_000692_220 Hb_009773_020 Hb_009773_020 Hb_004705_100--Hb_009773_020 Hb_006641_010 Hb_006641_010 Hb_074979_020--Hb_006641_010 Hb_012675_070 Hb_012675_070 Hb_074979_020--Hb_012675_070 Hb_074979_020--Hb_001242_110 Hb_037887_010 Hb_037887_010 Hb_074979_020--Hb_037887_010 Hb_001155_030 Hb_001155_030 Hb_074979_020--Hb_001155_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.578255 0.326511 0.105347 0.780363 0.451406 1.46095
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.615425 1.33056 1.08353 0.515963 0.12014

CAGE analysis