Hb_000108_150

Information

Type -
Description -
Location Contig108: 120511-139787
Sequence    

Annotation

kegg
ID rcu:RCOM_1987010
description alpha/beta hydrolase, putative
nr
ID XP_002535683.1
description alpha/beta hydrolase, putative [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9TBR4
description Alpha/beta hydrolase, putative OS=Ricinus communis GN=RCOM_1987010 PE=4 SV=1
Gene Ontology
ID GO:0016787
description alpha beta

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02389: 120645-120777
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000108_150 0.0 - - alpha/beta hydrolase, putative [Ricinus communis]
2 Hb_000061_250 0.0595748299 - - hypothetical protein JCGZ_11665 [Jatropha curcas]
3 Hb_000045_050 0.0699646547 - - PREDICTED: probable zinc metalloprotease EGY2, chloroplastic [Jatropha curcas]
4 Hb_071079_020 0.073683818 - - RNA polymerase sigma factor rpoD, putative [Ricinus communis]
5 Hb_005181_120 0.0860196145 - - PREDICTED: psbB mRNA maturation factor Mbb1, chloroplastic isoform X1 [Jatropha curcas]
6 Hb_000264_280 0.0899994969 - - PREDICTED: E3 ubiquitin-protein ligase RMA1H1-like [Jatropha curcas]
7 Hb_007904_060 0.0906879337 - - PREDICTED: very-long-chain 3-oxoacyl-CoA reductase 1 [Jatropha curcas]
8 Hb_004242_170 0.0907634169 - - calcium/calmodulin-regulated receptor-like kinase [Manihot esculenta]
9 Hb_000099_170 0.0939306824 - - PREDICTED: uncharacterized protein LOC105645733 [Jatropha curcas]
10 Hb_032631_030 0.0955465543 - - phosphatidic acid phosphatase, putative [Ricinus communis]
11 Hb_158092_100 0.0958129006 - - PREDICTED: uncharacterized protein LOC105647301 [Jatropha curcas]
12 Hb_003948_020 0.0963950621 - - PREDICTED: transmembrane protein 41B [Jatropha curcas]
13 Hb_002817_040 0.0999454814 - - PREDICTED: kinesin-II 85 kDa subunit isoform X1 [Jatropha curcas]
14 Hb_002374_450 0.1026284107 - - PREDICTED: chlorophyllide a oxygenase, chloroplastic [Jatropha curcas]
15 Hb_000679_080 0.1027708374 - - PREDICTED: lactation elevated protein 1 isoform X1 [Jatropha curcas]
16 Hb_000441_050 0.1031784657 - - PREDICTED: 187-kDa microtubule-associated protein AIR9 [Jatropha curcas]
17 Hb_004055_160 0.1057767572 - - PREDICTED: glyoxylate/succinic semialdehyde reductase 2, chloroplastic [Jatropha curcas]
18 Hb_006420_010 0.1087088807 - - PREDICTED: uncharacterized protein LOC105649815 [Jatropha curcas]
19 Hb_001269_500 0.1109313447 - - PREDICTED: protein LOW PSII ACCUMULATION 3, chloroplastic-like isoform X2 [Populus euphratica]
20 Hb_003935_070 0.1112781849 - - PREDICTED: uncharacterized protein At1g04910 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000108_150 Hb_000108_150 Hb_000061_250 Hb_000061_250 Hb_000108_150--Hb_000061_250 Hb_000045_050 Hb_000045_050 Hb_000108_150--Hb_000045_050 Hb_071079_020 Hb_071079_020 Hb_000108_150--Hb_071079_020 Hb_005181_120 Hb_005181_120 Hb_000108_150--Hb_005181_120 Hb_000264_280 Hb_000264_280 Hb_000108_150--Hb_000264_280 Hb_007904_060 Hb_007904_060 Hb_000108_150--Hb_007904_060 Hb_000061_250--Hb_000045_050 Hb_000544_080 Hb_000544_080 Hb_000061_250--Hb_000544_080 Hb_000061_250--Hb_000264_280 Hb_003948_020 Hb_003948_020 Hb_000061_250--Hb_003948_020 Hb_000390_210 Hb_000390_210 Hb_000061_250--Hb_000390_210 Hb_000045_050--Hb_000544_080 Hb_000045_050--Hb_003948_020 Hb_002811_250 Hb_002811_250 Hb_000045_050--Hb_002811_250 Hb_000045_050--Hb_005181_120 Hb_071079_020--Hb_000045_050 Hb_000099_170 Hb_000099_170 Hb_071079_020--Hb_000099_170 Hb_071079_020--Hb_000061_250 Hb_004242_170 Hb_004242_170 Hb_071079_020--Hb_004242_170 Hb_071079_020--Hb_005181_120 Hb_010098_040 Hb_010098_040 Hb_005181_120--Hb_010098_040 Hb_000516_080 Hb_000516_080 Hb_005181_120--Hb_000516_080 Hb_000679_080 Hb_000679_080 Hb_005181_120--Hb_000679_080 Hb_005181_120--Hb_002811_250 Hb_007982_040 Hb_007982_040 Hb_005181_120--Hb_007982_040 Hb_003664_030 Hb_003664_030 Hb_000264_280--Hb_003664_030 Hb_001269_500 Hb_001269_500 Hb_000264_280--Hb_001269_500 Hb_000264_280--Hb_003948_020 Hb_001649_030 Hb_001649_030 Hb_000264_280--Hb_001649_030 Hb_005784_030 Hb_005784_030 Hb_007904_060--Hb_005784_030 Hb_158092_100 Hb_158092_100 Hb_007904_060--Hb_158092_100 Hb_006420_010 Hb_006420_010 Hb_007904_060--Hb_006420_010 Hb_003020_250 Hb_003020_250 Hb_007904_060--Hb_003020_250 Hb_003752_090 Hb_003752_090 Hb_007904_060--Hb_003752_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.936327 1.77472 10.6593 8.26072 1.24755 1.18769
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.15279 1.17854 0.911143 1.62671 15.3644

CAGE analysis