Hb_000108_190

Information

Type -
Description -
Location Contig108: 156661-164384
Sequence    

Annotation

kegg
ID rcu:RCOM_0164820
description dihydroorotate dehydrogenase, putative (EC:1.3.3.1)
nr
ID XP_012079499.1
description PREDICTED: dihydroorotate dehydrogenase (quinone), mitochondrial [Jatropha curcas]
swissprot
ID P32746
description Dihydroorotate dehydrogenase (quinone), mitochondrial OS=Arabidopsis thaliana GN=PYRD PE=1 SV=2
trembl
ID A0A067LF28
description Dihydroorotate dehydrogenase (quinone), mitochondrial OS=Jatropha curcas GN=JCGZ_17425 PE=3 SV=1
Gene Ontology
ID GO:0005743
description dihydroorotate dehydrogenase mitochondrial-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02398: 156799-164353
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000108_190 0.0 - - PREDICTED: dihydroorotate dehydrogenase (quinone), mitochondrial [Jatropha curcas]
2 Hb_004126_070 0.0772155218 desease resistance Gene Name: CDC48_2 PREDICTED: vesicle-fusing ATPase [Jatropha curcas]
3 Hb_000120_020 0.0803575647 - - PREDICTED: inositol 3-kinase [Jatropha curcas]
4 Hb_000841_020 0.0859645793 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10-B-like [Populus euphratica]
5 Hb_028515_010 0.0877420368 - - PREDICTED: protein DEFECTIVE IN MERISTEM SILENCING 3 isoform X1 [Jatropha curcas]
6 Hb_000291_080 0.0895853883 - - Vacuolar protein sorting-associated protein VPS9, putative [Ricinus communis]
7 Hb_002742_090 0.0908218548 - - PREDICTED: putative glucose-6-phosphate 1-epimerase [Jatropha curcas]
8 Hb_005568_120 0.0922673175 - - Prephenate dehydratase [Hevea brasiliensis]
9 Hb_000817_030 0.0933787211 - - mak, putative [Ricinus communis]
10 Hb_000617_150 0.0938335299 - - PREDICTED: pentatricopeptide repeat-containing protein At3g61360-like [Jatropha curcas]
11 Hb_000398_040 0.0952847329 - - Auxin response factor, putative [Ricinus communis]
12 Hb_011381_080 0.0976061833 - - PREDICTED: probable protein phosphatase 2C 59 [Jatropha curcas]
13 Hb_001059_030 0.0993547743 - - PREDICTED: F-box protein At5g03100-like [Solanum lycopersicum]
14 Hb_001699_130 0.0994849515 transcription factor TF Family: CSD PREDICTED: cold shock domain-containing protein 3 [Jatropha curcas]
15 Hb_009113_070 0.0999421472 - - hypothetical protein POPTR_0010s07510g [Populus trichocarpa]
16 Hb_002111_040 0.1003787594 - - hypothetical protein JCGZ_16989 [Jatropha curcas]
17 Hb_000023_090 0.1005908671 - - mak, putative [Ricinus communis]
18 Hb_000985_060 0.1009441991 - - PREDICTED: protein transport protein SFT2-like isoform X1 [Jatropha curcas]
19 Hb_011534_030 0.1010785739 - - hypothetical protein POPTR_0008s08530g [Populus trichocarpa]
20 Hb_005883_100 0.1011811686 - - 5-formyltetrahydrofolate cyclo-ligase, putative [Ricinus communis]

Gene co-expression network

sample Hb_000108_190 Hb_000108_190 Hb_004126_070 Hb_004126_070 Hb_000108_190--Hb_004126_070 Hb_000120_020 Hb_000120_020 Hb_000108_190--Hb_000120_020 Hb_000841_020 Hb_000841_020 Hb_000108_190--Hb_000841_020 Hb_028515_010 Hb_028515_010 Hb_000108_190--Hb_028515_010 Hb_000291_080 Hb_000291_080 Hb_000108_190--Hb_000291_080 Hb_002742_090 Hb_002742_090 Hb_000108_190--Hb_002742_090 Hb_004126_070--Hb_000841_020 Hb_001897_040 Hb_001897_040 Hb_004126_070--Hb_001897_040 Hb_004126_070--Hb_000291_080 Hb_032264_110 Hb_032264_110 Hb_004126_070--Hb_032264_110 Hb_001059_030 Hb_001059_030 Hb_004126_070--Hb_001059_030 Hb_011381_080 Hb_011381_080 Hb_000120_020--Hb_011381_080 Hb_000120_020--Hb_002742_090 Hb_000016_160 Hb_000016_160 Hb_000120_020--Hb_000016_160 Hb_000120_020--Hb_028515_010 Hb_000254_050 Hb_000254_050 Hb_000120_020--Hb_000254_050 Hb_000398_040 Hb_000398_040 Hb_000841_020--Hb_000398_040 Hb_017225_020 Hb_017225_020 Hb_000841_020--Hb_017225_020 Hb_002111_040 Hb_002111_040 Hb_000841_020--Hb_002111_040 Hb_009113_070 Hb_009113_070 Hb_000841_020--Hb_009113_070 Hb_005568_120 Hb_005568_120 Hb_028515_010--Hb_005568_120 Hb_004837_160 Hb_004837_160 Hb_028515_010--Hb_004837_160 Hb_000373_130 Hb_000373_130 Hb_028515_010--Hb_000373_130 Hb_003349_090 Hb_003349_090 Hb_028515_010--Hb_003349_090 Hb_114310_080 Hb_114310_080 Hb_028515_010--Hb_114310_080 Hb_000985_060 Hb_000985_060 Hb_028515_010--Hb_000985_060 Hb_001390_130 Hb_001390_130 Hb_000291_080--Hb_001390_130 Hb_000291_080--Hb_002111_040 Hb_000820_090 Hb_000820_090 Hb_000291_080--Hb_000820_090 Hb_003697_040 Hb_003697_040 Hb_000291_080--Hb_003697_040 Hb_004696_080 Hb_004696_080 Hb_000291_080--Hb_004696_080 Hb_000363_360 Hb_000363_360 Hb_000291_080--Hb_000363_360 Hb_000817_030 Hb_000817_030 Hb_002742_090--Hb_000817_030 Hb_001776_160 Hb_001776_160 Hb_002742_090--Hb_001776_160 Hb_002742_090--Hb_028515_010 Hb_002110_200 Hb_002110_200 Hb_002742_090--Hb_002110_200 Hb_068056_030 Hb_068056_030 Hb_002742_090--Hb_068056_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.49721 2.8536 2.24441 6.42847 7.01677 5.03487
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.78197 14.2442 13.6907 6.52537 5.48185

CAGE analysis