Hb_000109_090

Information

Type -
Description -
Location Contig109: 180035-183823
Sequence    

Annotation

kegg
ID rcu:RCOM_0993240
description lyase, putative
nr
ID XP_012092078.1
description PREDICTED: deoxyhypusine hydroxylase [Jatropha curcas]
swissprot
ID Q94JW0
description Deoxyhypusine hydroxylase OS=Arabidopsis thaliana GN=At3g58180 PE=1 SV=1
trembl
ID A0A067JBW9
description Deoxyhypusine hydroxylase OS=Jatropha curcas GN=JCGZ_21802 PE=3 SV=1
Gene Ontology
ID GO:0005829
description deoxyhypusine hydroxylase-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02711: 180060-183778 , PASA_asmbl_02712: 180304-183803
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000109_090 0.0 - - PREDICTED: deoxyhypusine hydroxylase [Jatropha curcas]
2 Hb_000853_170 0.0631759643 - - PREDICTED: programmed cell death protein 2 isoform X3 [Populus euphratica]
3 Hb_010921_010 0.0717035414 - - Small nuclear ribonucleoprotein family protein [Theobroma cacao]
4 Hb_003398_130 0.0724440556 - - PREDICTED: serine/arginine-rich SC35-like splicing factor SCL30 [Gossypium raimondii]
5 Hb_003126_080 0.0779939285 - - PREDICTED: uncharacterized protein LOC105647117 [Jatropha curcas]
6 Hb_002043_190 0.0791719106 - - rwd domain-containing protein, putative [Ricinus communis]
7 Hb_005993_040 0.0800137933 - - PREDICTED: tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit wdr4 [Jatropha curcas]
8 Hb_000656_400 0.0805485159 - - PREDICTED: transcription initiation factor TFIID subunit 9 [Jatropha curcas]
9 Hb_004117_010 0.0816885683 - - 60S ribosomal protein L10, mitochondrial, putative [Ricinus communis]
10 Hb_000661_250 0.0864178666 - - PREDICTED: RNA-binding protein 8A [Jatropha curcas]
11 Hb_002928_130 0.0881042685 - - PREDICTED: small nuclear ribonucleoprotein Sm D3 [Jatropha curcas]
12 Hb_000365_120 0.0882703272 - - PREDICTED: bifunctional protein FolD 1, mitochondrial [Jatropha curcas]
13 Hb_001259_090 0.0887208631 - - hypothetical protein B456_005G056700 [Gossypium raimondii]
14 Hb_000059_330 0.0891523092 - - PREDICTED: polyadenylate-binding protein 1 [Jatropha curcas]
15 Hb_000853_420 0.0894649503 - - PREDICTED: phosphoribosylformylglycinamidine cyclo-ligase, chloroplastic/mitochondrial [Jatropha curcas]
16 Hb_008055_040 0.0897253567 - - PREDICTED: chromatin assembly factor 1 subunit FAS2 [Jatropha curcas]
17 Hb_001404_100 0.090129524 - - PREDICTED: eukaryotic translation initiation factor 3 subunit K [Gossypium raimondii]
18 Hb_004491_010 0.0902858473 - - 60S ribosomal protein L51, putative [Ricinus communis]
19 Hb_002349_040 0.0903038121 - - PREDICTED: RNA pseudouridine synthase 5 [Jatropha curcas]
20 Hb_028227_020 0.0906618145 - - PREDICTED: alpha-ketoglutarate-dependent dioxygenase alkB isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000109_090 Hb_000109_090 Hb_000853_170 Hb_000853_170 Hb_000109_090--Hb_000853_170 Hb_010921_010 Hb_010921_010 Hb_000109_090--Hb_010921_010 Hb_003398_130 Hb_003398_130 Hb_000109_090--Hb_003398_130 Hb_003126_080 Hb_003126_080 Hb_000109_090--Hb_003126_080 Hb_002043_190 Hb_002043_190 Hb_000109_090--Hb_002043_190 Hb_005993_040 Hb_005993_040 Hb_000109_090--Hb_005993_040 Hb_000853_420 Hb_000853_420 Hb_000853_170--Hb_000853_420 Hb_005276_210 Hb_005276_210 Hb_000853_170--Hb_005276_210 Hb_001006_140 Hb_001006_140 Hb_000853_170--Hb_001006_140 Hb_015746_010 Hb_015746_010 Hb_000853_170--Hb_015746_010 Hb_004577_020 Hb_004577_020 Hb_000853_170--Hb_004577_020 Hb_001512_060 Hb_001512_060 Hb_010921_010--Hb_001512_060 Hb_001534_120 Hb_001534_120 Hb_010921_010--Hb_001534_120 Hb_010921_010--Hb_005993_040 Hb_007154_020 Hb_007154_020 Hb_010921_010--Hb_007154_020 Hb_002686_020 Hb_002686_020 Hb_010921_010--Hb_002686_020 Hb_006816_220 Hb_006816_220 Hb_003398_130--Hb_006816_220 Hb_003398_130--Hb_010921_010 Hb_028227_020 Hb_028227_020 Hb_003398_130--Hb_028227_020 Hb_002284_090 Hb_002284_090 Hb_003398_130--Hb_002284_090 Hb_005306_170 Hb_005306_170 Hb_003398_130--Hb_005306_170 Hb_000656_400 Hb_000656_400 Hb_003126_080--Hb_000656_400 Hb_003126_080--Hb_005993_040 Hb_172632_090 Hb_172632_090 Hb_003126_080--Hb_172632_090 Hb_000205_160 Hb_000205_160 Hb_003126_080--Hb_000205_160 Hb_004491_010 Hb_004491_010 Hb_003126_080--Hb_004491_010 Hb_004223_280 Hb_004223_280 Hb_003126_080--Hb_004223_280 Hb_002043_190--Hb_005993_040 Hb_002043_190--Hb_015746_010 Hb_002081_130 Hb_002081_130 Hb_002043_190--Hb_002081_130 Hb_003126_050 Hb_003126_050 Hb_002043_190--Hb_003126_050 Hb_002233_150 Hb_002233_150 Hb_002043_190--Hb_002233_150 Hb_000041_270 Hb_000041_270 Hb_002043_190--Hb_000041_270 Hb_002928_130 Hb_002928_130 Hb_005993_040--Hb_002928_130 Hb_011571_020 Hb_011571_020 Hb_005993_040--Hb_011571_020 Hb_011360_140 Hb_011360_140 Hb_005993_040--Hb_011360_140 Hb_000392_440 Hb_000392_440 Hb_005993_040--Hb_000392_440
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
16.0844 8.16624 9.68823 5.77542 16.5677 14.3334
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
23.291 22.0515 8.73196 11.1945 7.22103

CAGE analysis