Hb_000109_100

Information

Type -
Description -
Location Contig109: 184449-197667
Sequence    

Annotation

kegg
ID rcu:RCOM_0993250
description poly [ADP-ribose] polymerase, putative (EC:1.3.1.74)
nr
ID XP_012092077.1
description PREDICTED: poly [ADP-ribose] polymerase 1 [Jatropha curcas]
swissprot
ID Q9ZP54
description Poly [ADP-ribose] polymerase 1 OS=Arabidopsis thaliana GN=PARP1 PE=1 SV=2
trembl
ID A0A067JMU5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21801 PE=4 SV=1
Gene Ontology
ID GO:0005634
description poly

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02711: 180060-183778 , PASA_asmbl_02712: 180304-183803 , PASA_asmbl_02713: 184614-197339
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000109_100 0.0 - - PREDICTED: poly [ADP-ribose] polymerase 1 [Jatropha curcas]
2 Hb_000505_020 0.0433445772 - - PREDICTED: protein S-acyltransferase 24 [Jatropha curcas]
3 Hb_000160_290 0.0621707311 - - unnamed protein product [Vitis vinifera]
4 Hb_002078_100 0.0634064317 - - PREDICTED: mannosyl-oligosaccharide glucosidase GCS1-like [Jatropha curcas]
5 Hb_000300_440 0.0635672975 - - MIF4G domain and MA3 domain-containing protein isoform 1 [Theobroma cacao]
6 Hb_001623_480 0.0660392448 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 13 [Jatropha curcas]
7 Hb_003299_070 0.0703944232 - - AMP deaminase [Theobroma cacao]
8 Hb_001454_320 0.0725625266 - - PREDICTED: protein pleiotropic regulatory locus 1 isoform X1 [Jatropha curcas]
9 Hb_001493_040 0.0760874793 - - PREDICTED: FACT complex subunit SPT16-like [Jatropha curcas]
10 Hb_001417_050 0.0766452098 - - PREDICTED: G patch domain-containing protein TGH [Jatropha curcas]
11 Hb_002235_160 0.0789261429 - - PREDICTED: SNF1-related protein kinase catalytic subunit alpha KIN10 [Jatropha curcas]
12 Hb_010315_090 0.0800727389 - - suppressor of ty, putative [Ricinus communis]
13 Hb_100215_010 0.0811798809 - - PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform X1 [Jatropha curcas]
14 Hb_007558_120 0.0815579478 transcription factor TF Family: IWS1 transcription elongation factor s-II, putative [Ricinus communis]
15 Hb_000856_140 0.0815858766 - - PREDICTED: uncharacterized protein LOC105640478 isoform X1 [Jatropha curcas]
16 Hb_004429_160 0.0832005945 - - PREDICTED: serine/threonine-protein kinase TAO3 isoform X1 [Jatropha curcas]
17 Hb_002422_050 0.0837421731 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 5 isoform X1 [Jatropha curcas]
18 Hb_104061_020 0.08416347 - - PREDICTED: UV-stimulated scaffold protein A homolog [Jatropha curcas]
19 Hb_010695_020 0.0847115992 - - PREDICTED: superkiller viralicidic activity 2-like 2 [Jatropha curcas]
20 Hb_000796_190 0.0849423927 - - hypothetical protein F383_31148 [Gossypium arboreum]

Gene co-expression network

sample Hb_000109_100 Hb_000109_100 Hb_000505_020 Hb_000505_020 Hb_000109_100--Hb_000505_020 Hb_000160_290 Hb_000160_290 Hb_000109_100--Hb_000160_290 Hb_002078_100 Hb_002078_100 Hb_000109_100--Hb_002078_100 Hb_000300_440 Hb_000300_440 Hb_000109_100--Hb_000300_440 Hb_001623_480 Hb_001623_480 Hb_000109_100--Hb_001623_480 Hb_003299_070 Hb_003299_070 Hb_000109_100--Hb_003299_070 Hb_010053_030 Hb_010053_030 Hb_000505_020--Hb_010053_030 Hb_104061_020 Hb_104061_020 Hb_000505_020--Hb_104061_020 Hb_003498_120 Hb_003498_120 Hb_000505_020--Hb_003498_120 Hb_000505_020--Hb_002078_100 Hb_001235_140 Hb_001235_140 Hb_000505_020--Hb_001235_140 Hb_002174_020 Hb_002174_020 Hb_000160_290--Hb_002174_020 Hb_000922_370 Hb_000922_370 Hb_000160_290--Hb_000922_370 Hb_001417_050 Hb_001417_050 Hb_000160_290--Hb_001417_050 Hb_002235_160 Hb_002235_160 Hb_000160_290--Hb_002235_160 Hb_003044_020 Hb_003044_020 Hb_000160_290--Hb_003044_020 Hb_001493_040 Hb_001493_040 Hb_000160_290--Hb_001493_040 Hb_000470_070 Hb_000470_070 Hb_002078_100--Hb_000470_070 Hb_009296_010 Hb_009296_010 Hb_002078_100--Hb_009296_010 Hb_000648_100 Hb_000648_100 Hb_002078_100--Hb_000648_100 Hb_174821_010 Hb_174821_010 Hb_002078_100--Hb_174821_010 Hb_019654_040 Hb_019654_040 Hb_002078_100--Hb_019654_040 Hb_000343_030 Hb_000343_030 Hb_000300_440--Hb_000343_030 Hb_003952_150 Hb_003952_150 Hb_000300_440--Hb_003952_150 Hb_100215_010 Hb_100215_010 Hb_000300_440--Hb_100215_010 Hb_001172_010 Hb_001172_010 Hb_000300_440--Hb_001172_010 Hb_007307_020 Hb_007307_020 Hb_000300_440--Hb_007307_020 Hb_008024_030 Hb_008024_030 Hb_001623_480--Hb_008024_030 Hb_000920_210 Hb_000920_210 Hb_001623_480--Hb_000920_210 Hb_004920_090 Hb_004920_090 Hb_001623_480--Hb_004920_090 Hb_000740_100 Hb_000740_100 Hb_001623_480--Hb_000740_100 Hb_001623_480--Hb_104061_020 Hb_003935_030 Hb_003935_030 Hb_003299_070--Hb_003935_030 Hb_001454_320 Hb_001454_320 Hb_003299_070--Hb_001454_320 Hb_185679_010 Hb_185679_010 Hb_003299_070--Hb_185679_010 Hb_002163_010 Hb_002163_010 Hb_003299_070--Hb_002163_010 Hb_010695_020 Hb_010695_020 Hb_003299_070--Hb_010695_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
21.5996 18.4516 10.5514 10.5446 23.5325 24.5613
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
15.4987 5.53647 7.83037 19.0852 12.8578

CAGE analysis