Hb_000109_140

Information

Type -
Description -
Location Contig109: 228112-228833
Sequence    

Annotation

kegg
ID cic:CICLE_v100314482m
description hypothetical protein
nr
ID XP_006438437.1
description hypothetical protein CICLE_v100314482mg, partial [Citrus clementina]
swissprot
ID -
description -
trembl
ID V4TEH0
description Uncharacterized protein (Fragment) OS=Citrus clementina GN=CICLE_v100314482mg PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000109_140 0.0 - - hypothetical protein CICLE_v100314482mg, partial [Citrus clementina]
2 Hb_000189_180 0.0583790827 - - PREDICTED: calmodulin-like protein 11 [Jatropha curcas]
3 Hb_005731_010 0.0790871971 - - hypothetical protein VITISV_030941 [Vitis vinifera]
4 Hb_001958_010 0.0851335059 - - hypothetical protein CICLE_v100078532mg, partial [Citrus clementina]
5 Hb_004076_060 0.0860980498 - - PREDICTED: UDP-glycosyltransferase 82A1 [Jatropha curcas]
6 Hb_012655_010 0.0903866189 - - hypothetical protein JCGZ_09061 [Jatropha curcas]
7 Hb_003894_170 0.0963943491 transcription factor TF Family: LOB hypothetical protein CICLE_v10021992mg [Citrus clementina]
8 Hb_017043_040 0.0991729685 - - Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis]
9 Hb_004037_040 0.1189278921 - - PREDICTED: putative glucose-6-phosphate 1-epimerase [Jatropha curcas]
10 Hb_001348_040 0.1226476308 - - hypothetical protein VITISV_006651 [Vitis vinifera]
11 Hb_162174_010 0.1227797888 - - Xylem serine proteinase 1 precursor, putative [Ricinus communis]
12 Hb_002391_030 0.1236001322 - - hypothetical protein CISIN_1g020187mg [Citrus sinensis]
13 Hb_001514_030 0.1242473134 - - PREDICTED: cyclin-D3-3-like [Jatropha curcas]
14 Hb_001079_060 0.1271790903 - - PREDICTED: probable vacuolar amino acid transporter YPQ1 isoform X1 [Jatropha curcas]
15 Hb_001516_010 0.1295180818 - - PREDICTED: guanylate kinase 2 [Jatropha curcas]
16 Hb_004122_010 0.1303860966 - - PREDICTED: uncharacterized protein LOC105630923 [Jatropha curcas]
17 Hb_174168_010 0.1308589553 - - hypothetical protein JCGZ_06105 [Jatropha curcas]
18 Hb_007520_050 0.131481813 transcription factor TF Family: MYB PREDICTED: transcription factor WER-like [Jatropha curcas]
19 Hb_000941_110 0.1317355304 - - Serine/threonine-protein kinase PBS1, putative [Ricinus communis]
20 Hb_032572_010 0.1338482961 - - PREDICTED: phospholipase A2-alpha [Jatropha curcas]

Gene co-expression network

sample Hb_000109_140 Hb_000109_140 Hb_000189_180 Hb_000189_180 Hb_000109_140--Hb_000189_180 Hb_005731_010 Hb_005731_010 Hb_000109_140--Hb_005731_010 Hb_001958_010 Hb_001958_010 Hb_000109_140--Hb_001958_010 Hb_004076_060 Hb_004076_060 Hb_000109_140--Hb_004076_060 Hb_012655_010 Hb_012655_010 Hb_000109_140--Hb_012655_010 Hb_003894_170 Hb_003894_170 Hb_000109_140--Hb_003894_170 Hb_000189_180--Hb_001958_010 Hb_000189_180--Hb_004076_060 Hb_000189_180--Hb_005731_010 Hb_004037_040 Hb_004037_040 Hb_000189_180--Hb_004037_040 Hb_032572_010 Hb_032572_010 Hb_000189_180--Hb_032572_010 Hb_005731_010--Hb_012655_010 Hb_005731_010--Hb_004076_060 Hb_000941_110 Hb_000941_110 Hb_005731_010--Hb_000941_110 Hb_005731_010--Hb_001958_010 Hb_001958_010--Hb_004076_060 Hb_001958_010--Hb_032572_010 Hb_001958_010--Hb_000941_110 Hb_004076_060--Hb_012655_010 Hb_004076_060--Hb_000941_110 Hb_012655_010--Hb_000941_110 Hb_017043_040 Hb_017043_040 Hb_012655_010--Hb_017043_040 Hb_004204_060 Hb_004204_060 Hb_012655_010--Hb_004204_060 Hb_002301_120 Hb_002301_120 Hb_003894_170--Hb_002301_120 Hb_003894_170--Hb_000189_180 Hb_001079_060 Hb_001079_060 Hb_003894_170--Hb_001079_060 Hb_003894_170--Hb_004037_040 Hb_003894_170--Hb_004076_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 1.09465 0.779878 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.239057 0.634519

CAGE analysis