Hb_000109_150

Information

Type -
Description -
Location Contig109: 237798-243297
Sequence    

Annotation

kegg
ID rcu:RCOM_0993480
description hypothetical protein
nr
ID XP_002521024.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9S4L8
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0993480 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000109_150 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000751_090 0.15256394 - - -
3 Hb_001198_090 0.1783629366 - - PREDICTED: uncharacterized protein LOC105633343 [Jatropha curcas]
4 Hb_000977_140 0.180863764 - - PREDICTED: uncharacterized protein LOC105801335 [Gossypium raimondii]
5 Hb_000183_070 0.1855334795 - - -
6 Hb_010368_070 0.1879505429 - - conserved hypothetical protein [Ricinus communis]
7 Hb_002276_190 0.1884233772 - - PREDICTED: uncharacterized protein LOC105640686 [Jatropha curcas]
8 Hb_000188_190 0.1912497114 - - -
9 Hb_005015_010 0.1915393944 - - PREDICTED: programmed cell death protein 2-like [Jatropha curcas]
10 Hb_001454_390 0.1924927492 - - 8-kd dynein light chain, DLC8, pin [Thalassiosira pseudonana CCMP1335]
11 Hb_000038_130 0.194157869 - - -
12 Hb_009662_030 0.1945744757 - - hypothetical protein JCGZ_15748 [Jatropha curcas]
13 Hb_000352_150 0.1959639712 - - hypothetical protein JCGZ_11641 [Jatropha curcas]
14 Hb_000307_170 0.198568856 - - PREDICTED: uncharacterized protein LOC105638528 [Jatropha curcas]
15 Hb_003777_070 0.1988129522 - - -
16 Hb_002701_130 0.2005248958 transcription factor TF Family: MYB Myb domain protein 121 [Theobroma cacao]
17 Hb_008453_020 0.2015371491 - - PREDICTED: E3 ubiquitin-protein ligase ATL23 [Jatropha curcas]
18 Hb_130177_010 0.2022516383 - - hypothetical protein RCOM_0897890 [Ricinus communis]
19 Hb_000329_610 0.2025128125 - - conserved hypothetical protein [Ricinus communis]
20 Hb_005714_040 0.2027725557 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000109_150 Hb_000109_150 Hb_000751_090 Hb_000751_090 Hb_000109_150--Hb_000751_090 Hb_001198_090 Hb_001198_090 Hb_000109_150--Hb_001198_090 Hb_000977_140 Hb_000977_140 Hb_000109_150--Hb_000977_140 Hb_000183_070 Hb_000183_070 Hb_000109_150--Hb_000183_070 Hb_010368_070 Hb_010368_070 Hb_000109_150--Hb_010368_070 Hb_002276_190 Hb_002276_190 Hb_000109_150--Hb_002276_190 Hb_027556_010 Hb_027556_010 Hb_000751_090--Hb_027556_010 Hb_005015_010 Hb_005015_010 Hb_000751_090--Hb_005015_010 Hb_001158_030 Hb_001158_030 Hb_000751_090--Hb_001158_030 Hb_000958_010 Hb_000958_010 Hb_000751_090--Hb_000958_010 Hb_000751_090--Hb_000183_070 Hb_010931_110 Hb_010931_110 Hb_001198_090--Hb_010931_110 Hb_005529_010 Hb_005529_010 Hb_001198_090--Hb_005529_010 Hb_008453_020 Hb_008453_020 Hb_001198_090--Hb_008453_020 Hb_001198_090--Hb_002276_190 Hb_130177_010 Hb_130177_010 Hb_001198_090--Hb_130177_010 Hb_001427_170 Hb_001427_170 Hb_001198_090--Hb_001427_170 Hb_044662_040 Hb_044662_040 Hb_000977_140--Hb_044662_040 Hb_007992_030 Hb_007992_030 Hb_000977_140--Hb_007992_030 Hb_178345_010 Hb_178345_010 Hb_000977_140--Hb_178345_010 Hb_000977_140--Hb_000183_070 Hb_001437_300 Hb_001437_300 Hb_000977_140--Hb_001437_300 Hb_000038_130 Hb_000038_130 Hb_000977_140--Hb_000038_130 Hb_005714_040 Hb_005714_040 Hb_000183_070--Hb_005714_040 Hb_000183_070--Hb_001437_300 Hb_000183_070--Hb_005015_010 Hb_006501_150 Hb_006501_150 Hb_000183_070--Hb_006501_150 Hb_006452_190 Hb_006452_190 Hb_000183_070--Hb_006452_190 Hb_005389_140 Hb_005389_140 Hb_000183_070--Hb_005389_140 Hb_000525_040 Hb_000525_040 Hb_010368_070--Hb_000525_040 Hb_002903_120 Hb_002903_120 Hb_010368_070--Hb_002903_120 Hb_004032_460 Hb_004032_460 Hb_010368_070--Hb_004032_460 Hb_001628_110 Hb_001628_110 Hb_010368_070--Hb_001628_110 Hb_002172_030 Hb_002172_030 Hb_010368_070--Hb_002172_030 Hb_000050_120 Hb_000050_120 Hb_010368_070--Hb_000050_120 Hb_004032_050 Hb_004032_050 Hb_002276_190--Hb_004032_050 Hb_003605_070 Hb_003605_070 Hb_002276_190--Hb_003605_070 Hb_001623_580 Hb_001623_580 Hb_002276_190--Hb_001623_580 Hb_000175_490 Hb_000175_490 Hb_002276_190--Hb_000175_490 Hb_005288_160 Hb_005288_160 Hb_002276_190--Hb_005288_160 Hb_000768_030 Hb_000768_030 Hb_002276_190--Hb_000768_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.00571 0.0175428 0.114848 0.0179628 1.26255 0.383376
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.337499 0.606747 0.13996 0.198063 0

CAGE analysis