Hb_000109_160

Information

Type -
Description -
Location Contig109: 244417-246792
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa012786mg
description hypothetical protein
nr
ID XP_007202713.1
description hypothetical protein PRUPE_ppa012786mg [Prunus persica]
swissprot
ID A4WNX7
description 30S ribosomal protein S16 OS=Rhodobacter sphaeroides (strain ATCC 17025 / ATH 2.4.3) GN=rpsP PE=3 SV=1
trembl
ID M5VRD3
description Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012786mg PE=3 SV=1
Gene Ontology
ID GO:0005739
description 37s ribosomal protein mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02718: 244397-246724
cDNA
(Sanger)
(ID:Location)		 009_I19.ab1: 244398-246675 , 024_K06.ab1: 244415-246510

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000109_160 0.0 - - hypothetical protein PRUPE_ppa012786mg [Prunus persica]
2 Hb_005928_110 0.0633983651 - - PREDICTED: PRA1 family protein F2-like [Jatropha curcas]
3 Hb_007590_050 0.0666604352 - - NudC domain-containing protein, putative [Ricinus communis]
4 Hb_005357_030 0.0682652424 - - PREDICTED: pyruvate, phosphate dikinase regulatory protein 1, chloroplastic [Jatropha curcas]
5 Hb_002685_170 0.0762182825 - - hypothetical protein EUTSA_v10019281mg [Eutrema salsugineum]
6 Hb_020956_020 0.0791596923 - - PREDICTED: SNF1-related protein kinase regulatory subunit beta-3-like [Jatropha curcas]
7 Hb_000510_130 0.0796479332 - - PREDICTED: PRA1 family protein F2-like [Jatropha curcas]
8 Hb_001159_140 0.0796491282 - - hypothetical protein POPTR_0001s08090g [Populus trichocarpa]
9 Hb_109092_010 0.0821477174 transcription factor TF Family: mTERF conserved hypothetical protein [Ricinus communis]
10 Hb_001138_050 0.0844845674 - - hypothetical protein JCGZ_15696 [Jatropha curcas]
11 Hb_096563_010 0.0847808142 - - PREDICTED: cytoplasmic tRNA 2-thiolation protein 1 [Prunus mume]
12 Hb_086639_070 0.084802503 transcription factor TF Family: bHLH PREDICTED: transcription factor BIM2 [Jatropha curcas]
13 Hb_000923_020 0.0862109919 - - PREDICTED: ankyrin repeat domain-containing protein 65-like [Jatropha curcas]
14 Hb_004223_280 0.0885151098 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 6 [Jatropha curcas]
15 Hb_000245_130 0.0888803821 - - PREDICTED: nuclear pore complex protein NUP35 [Jatropha curcas]
16 Hb_009615_150 0.0902614888 - - PREDICTED: transcription elongation factor SPT4 homolog 2 [Jatropha curcas]
17 Hb_000529_020 0.0905167238 - - PREDICTED: 14-3-3-like protein GF14 kappa isoform X2 [Jatropha curcas]
18 Hb_005064_060 0.0909784305 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
19 Hb_001259_090 0.0911127093 - - hypothetical protein B456_005G056700 [Gossypium raimondii]
20 Hb_000661_250 0.0912487859 - - PREDICTED: RNA-binding protein 8A [Jatropha curcas]

Gene co-expression network

sample Hb_000109_160 Hb_000109_160 Hb_005928_110 Hb_005928_110 Hb_000109_160--Hb_005928_110 Hb_007590_050 Hb_007590_050 Hb_000109_160--Hb_007590_050 Hb_005357_030 Hb_005357_030 Hb_000109_160--Hb_005357_030 Hb_002685_170 Hb_002685_170 Hb_000109_160--Hb_002685_170 Hb_020956_020 Hb_020956_020 Hb_000109_160--Hb_020956_020 Hb_000510_130 Hb_000510_130 Hb_000109_160--Hb_000510_130 Hb_009615_150 Hb_009615_150 Hb_005928_110--Hb_009615_150 Hb_001610_110 Hb_001610_110 Hb_005928_110--Hb_001610_110 Hb_086639_070 Hb_086639_070 Hb_005928_110--Hb_086639_070 Hb_003994_180 Hb_003994_180 Hb_005928_110--Hb_003994_180 Hb_000621_080 Hb_000621_080 Hb_005928_110--Hb_000621_080 Hb_007590_050--Hb_005357_030 Hb_007590_050--Hb_002685_170 Hb_000656_400 Hb_000656_400 Hb_007590_050--Hb_000656_400 Hb_007590_050--Hb_020956_020 Hb_003126_080 Hb_003126_080 Hb_007590_050--Hb_003126_080 Hb_004223_280 Hb_004223_280 Hb_005357_030--Hb_004223_280 Hb_005357_030--Hb_002685_170 Hb_001138_050 Hb_001138_050 Hb_005357_030--Hb_001138_050 Hb_019253_020 Hb_019253_020 Hb_005357_030--Hb_019253_020 Hb_001226_160 Hb_001226_160 Hb_005357_030--Hb_001226_160 Hb_004491_010 Hb_004491_010 Hb_002685_170--Hb_004491_010 Hb_002685_170--Hb_004223_280 Hb_028995_040 Hb_028995_040 Hb_002685_170--Hb_028995_040 Hb_002685_170--Hb_003126_080 Hb_020956_020--Hb_000510_130 Hb_010504_020 Hb_010504_020 Hb_020956_020--Hb_010504_020 Hb_096563_010 Hb_096563_010 Hb_020956_020--Hb_096563_010 Hb_029866_090 Hb_029866_090 Hb_020956_020--Hb_029866_090 Hb_020956_020--Hb_001226_160 Hb_005305_080 Hb_005305_080 Hb_020956_020--Hb_005305_080 Hb_000510_130--Hb_010504_020 Hb_000510_130--Hb_005305_080 Hb_003092_040 Hb_003092_040 Hb_000510_130--Hb_003092_040 Hb_000510_130--Hb_004223_280 Hb_000953_020 Hb_000953_020 Hb_000510_130--Hb_000953_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
50.1514 40.8346 12.8054 29.0617 43.0466 50.2948
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
52.7272 64.5063 33.9001 26.5318 10.294

CAGE analysis