Hb_000109_230

Information

Type -
Description -
Location Contig109: 323354-325078
Sequence    

Annotation

kegg
ID rcu:RCOM_0993660
description hypothetical protein
nr
ID XP_002521032.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID P0C7P8
description Transcription factor EMB1444 OS=Arabidopsis thaliana GN=EMB1444 PE=2 SV=1
trembl
ID B9S4M6
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0993660 PE=4 SV=1
Gene Ontology
ID GO:0016301
description serine threonine-protein kinase wnk-related

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000109_230 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_001597_050 0.2147672327 - - -
3 Hb_007210_020 0.2313559824 - - PREDICTED: hexaprenyldihydroxybenzoate methyltransferase, mitochondrial-like [Solanum tuberosum]
4 Hb_000032_050 0.2357694645 - - hypothetical protein RCOM_1691130 [Ricinus communis]
5 Hb_000157_050 0.2360339891 - - conserved hypothetical protein [Ricinus communis]
6 Hb_001828_100 0.2403219776 - - PREDICTED: death-associated protein kinase dapk-1 [Jatropha curcas]
7 Hb_178968_040 0.2436679431 - - conserved hypothetical protein [Ricinus communis]
8 Hb_002228_080 0.2448656111 - - hypothetical protein JCGZ_12924 [Jatropha curcas]
9 Hb_014720_100 0.2574702677 - - PREDICTED: probable boron transporter 2 [Jatropha curcas]
10 Hb_033354_020 0.2588290707 - - ABC transporter family protein [Hevea brasiliensis]
11 Hb_003906_020 0.2599584395 - - PREDICTED: uncharacterized protein LOC105648535 [Jatropha curcas]
12 Hb_001486_270 0.2605897269 - - Ann10 [Manihot esculenta]
13 Hb_002874_020 0.2619306243 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105637459 isoform X1 [Jatropha curcas]
14 Hb_000948_200 0.2661487353 - - hypothetical protein CARUB_v10021660mg, partial [Capsella rubella]
15 Hb_000544_030 0.2727827079 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000345_080 0.2740988313 - - PREDICTED: protein RALF-like 33 [Jatropha curcas]
17 Hb_007416_100 0.2753731143 - - PREDICTED: probable xyloglucan glycosyltransferase 5 [Jatropha curcas]
18 Hb_003875_010 0.2754148965 - - hypothetical protein POPTR_0002s14490g, partial [Populus trichocarpa]
19 Hb_128473_010 0.2804635598 - - -
20 Hb_000345_060 0.2859351298 - - PREDICTED: REF/SRPP-like protein At3g05500 [Jatropha curcas]

Gene co-expression network

sample Hb_000109_230 Hb_000109_230 Hb_001597_050 Hb_001597_050 Hb_000109_230--Hb_001597_050 Hb_007210_020 Hb_007210_020 Hb_000109_230--Hb_007210_020 Hb_000032_050 Hb_000032_050 Hb_000109_230--Hb_000032_050 Hb_000157_050 Hb_000157_050 Hb_000109_230--Hb_000157_050 Hb_001828_100 Hb_001828_100 Hb_000109_230--Hb_001828_100 Hb_178968_040 Hb_178968_040 Hb_000109_230--Hb_178968_040 Hb_001584_240 Hb_001584_240 Hb_001597_050--Hb_001584_240 Hb_000740_150 Hb_000740_150 Hb_001597_050--Hb_000740_150 Hb_001486_270 Hb_001486_270 Hb_001597_050--Hb_001486_270 Hb_000776_060 Hb_000776_060 Hb_001597_050--Hb_000776_060 Hb_000483_400 Hb_000483_400 Hb_001597_050--Hb_000483_400 Hb_003875_010 Hb_003875_010 Hb_001597_050--Hb_003875_010 Hb_000191_140 Hb_000191_140 Hb_007210_020--Hb_000191_140 Hb_005144_170 Hb_005144_170 Hb_007210_020--Hb_005144_170 Hb_004785_050 Hb_004785_050 Hb_007210_020--Hb_004785_050 Hb_128473_010 Hb_128473_010 Hb_007210_020--Hb_128473_010 Hb_007210_020--Hb_000157_050 Hb_001922_180 Hb_001922_180 Hb_000032_050--Hb_001922_180 Hb_000445_170 Hb_000445_170 Hb_000032_050--Hb_000445_170 Hb_113739_010 Hb_113739_010 Hb_000032_050--Hb_113739_010 Hb_033354_020 Hb_033354_020 Hb_000032_050--Hb_033354_020 Hb_000032_050--Hb_001828_100 Hb_001635_010 Hb_001635_010 Hb_000157_050--Hb_001635_010 Hb_000028_260 Hb_000028_260 Hb_000157_050--Hb_000028_260 Hb_000157_050--Hb_001597_050 Hb_000157_050--Hb_178968_040 Hb_002228_080 Hb_002228_080 Hb_000157_050--Hb_002228_080 Hb_000157_050--Hb_001486_270 Hb_118228_010 Hb_118228_010 Hb_001828_100--Hb_118228_010 Hb_000261_170 Hb_000261_170 Hb_001828_100--Hb_000261_170 Hb_004158_100 Hb_004158_100 Hb_001828_100--Hb_004158_100 Hb_001828_100--Hb_128473_010 Hb_014720_100 Hb_014720_100 Hb_178968_040--Hb_014720_100 Hb_017002_010 Hb_017002_010 Hb_178968_040--Hb_017002_010 Hb_004079_050 Hb_004079_050 Hb_178968_040--Hb_004079_050 Hb_002686_260 Hb_002686_260 Hb_178968_040--Hb_002686_260 Hb_000345_080 Hb_000345_080 Hb_178968_040--Hb_000345_080 Hb_004125_070 Hb_004125_070 Hb_178968_040--Hb_004125_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.67811 0.0396668 1.96979 6.27445 0.0583098 0.0948782
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.53762 1.42571 0.197924 0.0286081 0.513546

CAGE analysis