Hb_000109_260

Information

Type -
Description -
Location Contig109: 366209-384953
Sequence    

Annotation

kegg
ID rcu:RCOM_0393280
description Auxin-induced protein 5NG4, putative
nr
ID XP_012092057.1
description PREDICTED: WAT1-related protein At3g28050-like isoform X1 [Jatropha curcas]
swissprot
ID F4I5D5
description WAT1-related protein At1g70260 OS=Arabidopsis thaliana GN=At1g70260 PE=2 SV=1
trembl
ID A0A067JEY4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21789 PE=4 SV=1
Gene Ontology
ID GO:0016021
description wat1-related protein at3g28050-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02736: 366225-371682 , PASA_asmbl_02737: 366280-371508
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000109_260 0.0 - - PREDICTED: WAT1-related protein At3g28050-like isoform X1 [Jatropha curcas]
2 Hb_000976_110 0.0551393037 - - PREDICTED: KRR1 small subunit processome component homolog [Jatropha curcas]
3 Hb_003490_060 0.0698649869 - - PREDICTED: probable cyclic nucleotide-gated ion channel 20, chloroplastic isoform X2 [Sesamum indicum]
4 Hb_003680_020 0.0782767169 - - UDP-glucosyltransferase, putative [Ricinus communis]
5 Hb_011674_040 0.0819700069 - - PREDICTED: uncharacterized protein LOC105648163 isoform X1 [Jatropha curcas]
6 Hb_000009_030 0.0851615601 - - PREDICTED: splicing factor U2af large subunit B isoform X1 [Jatropha curcas]
7 Hb_003490_050 0.0866576689 - - PREDICTED: probable cyclic nucleotide-gated ion channel 20, chloroplastic [Jatropha curcas]
8 Hb_005854_040 0.0926260591 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000318_150 0.0938685835 - - RNA-binding protein Nova-1, putative [Ricinus communis]
10 Hb_000342_050 0.0948871858 - - hypothetical protein POPTR_0006s24710g [Populus trichocarpa]
11 Hb_000960_080 0.0954541568 - - PREDICTED: topless-related protein 1-like isoform X2 [Jatropha curcas]
12 Hb_002232_490 0.0957467514 - - PREDICTED: probable sphingolipid transporter spinster homolog 2 isoform X1 [Jatropha curcas]
13 Hb_000027_200 0.0958170644 - - PREDICTED: uncharacterized protein LOC105642055 [Jatropha curcas]
14 Hb_001507_050 0.0979337294 - - PREDICTED: cysteine desulfurase 1, chloroplastic isoform X1 [Jatropha curcas]
15 Hb_003661_010 0.0982927575 - - PREDICTED: zinc transporter 6, chloroplastic [Jatropha curcas]
16 Hb_004162_220 0.0985566168 - - PREDICTED: pheophorbide a oxygenase, chloroplastic [Jatropha curcas]
17 Hb_160608_010 0.0986209896 - - PREDICTED: BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1-like isoform X1 [Populus euphratica]
18 Hb_000787_200 0.0992030616 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
19 Hb_006210_010 0.0993649416 - - PREDICTED: probable acyl-activating enzyme 17, peroxisomal isoform X2 [Jatropha curcas]
20 Hb_005883_110 0.0999535157 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH79-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000109_260 Hb_000109_260 Hb_000976_110 Hb_000976_110 Hb_000109_260--Hb_000976_110 Hb_003490_060 Hb_003490_060 Hb_000109_260--Hb_003490_060 Hb_003680_020 Hb_003680_020 Hb_000109_260--Hb_003680_020 Hb_011674_040 Hb_011674_040 Hb_000109_260--Hb_011674_040 Hb_000009_030 Hb_000009_030 Hb_000109_260--Hb_000009_030 Hb_003490_050 Hb_003490_050 Hb_000109_260--Hb_003490_050 Hb_000976_110--Hb_011674_040 Hb_000976_110--Hb_000009_030 Hb_000976_110--Hb_003490_060 Hb_000318_150 Hb_000318_150 Hb_000976_110--Hb_000318_150 Hb_000787_200 Hb_000787_200 Hb_000976_110--Hb_000787_200 Hb_002828_060 Hb_002828_060 Hb_003490_060--Hb_002828_060 Hb_106890_010 Hb_106890_010 Hb_003490_060--Hb_106890_010 Hb_002392_020 Hb_002392_020 Hb_003490_060--Hb_002392_020 Hb_003355_010 Hb_003355_010 Hb_003490_060--Hb_003355_010 Hb_000960_080 Hb_000960_080 Hb_003680_020--Hb_000960_080 Hb_000844_050 Hb_000844_050 Hb_003680_020--Hb_000844_050 Hb_001507_050 Hb_001507_050 Hb_003680_020--Hb_001507_050 Hb_003661_010 Hb_003661_010 Hb_003680_020--Hb_003661_010 Hb_048476_080 Hb_048476_080 Hb_003680_020--Hb_048476_080 Hb_000059_240 Hb_000059_240 Hb_003680_020--Hb_000059_240 Hb_000270_170 Hb_000270_170 Hb_011674_040--Hb_000270_170 Hb_011674_040--Hb_000787_200 Hb_003636_080 Hb_003636_080 Hb_011674_040--Hb_003636_080 Hb_011674_040--Hb_000318_150 Hb_011674_040--Hb_000960_080 Hb_005489_040 Hb_005489_040 Hb_000009_030--Hb_005489_040 Hb_000009_030--Hb_000318_150 Hb_000009_030--Hb_000787_200 Hb_160608_010 Hb_160608_010 Hb_000009_030--Hb_160608_010 Hb_001587_030 Hb_001587_030 Hb_000009_030--Hb_001587_030 Hb_002232_490 Hb_002232_490 Hb_003490_050--Hb_002232_490 Hb_000922_260 Hb_000922_260 Hb_003490_050--Hb_000922_260 Hb_003490_050--Hb_003490_060 Hb_005571_010 Hb_005571_010 Hb_003490_050--Hb_005571_010 Hb_001341_010 Hb_001341_010 Hb_003490_050--Hb_001341_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.38263 6.38729 7.2057 6.75688 2.52557 3.27322
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.26681 2.15077 1.52588 9.20249 10.5362

CAGE analysis