Hb_000110_160

Information

Type -
Description -
Location Contig110: 220473-222966
Sequence    

Annotation

kegg
ID rcu:RCOM_1202340
description hypothetical protein
nr
ID XP_002531334.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SZB5
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1202340 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03052: 220515-222925
cDNA
(Sanger)
(ID:Location)		 016_O21.ab1: 220515-221684 , 028_A09.ab1: 220515-221582 , 029_H20.ab1: 220515-221524 , 030_J14.ab1: 220515-221657 , 031_M05.ab1: 220515-221597

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000110_160 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_001329_300 0.0516980725 - - PREDICTED: L-cysteine desulfhydrase [Jatropha curcas]
3 Hb_008066_010 0.0651071721 - - PREDICTED: translation initiation factor eIF-2B subunit alpha-like [Jatropha curcas]
4 Hb_011918_080 0.0724179601 - - PREDICTED: probable serine/threonine protein kinase IREH1 isoform X2 [Jatropha curcas]
5 Hb_001051_100 0.0787794354 transcription factor TF Family: ARF Auxin response factor, putative [Ricinus communis]
6 Hb_000567_260 0.0796698655 - - BnaA09g41440D [Brassica napus]
7 Hb_178968_110 0.0807090621 - - PREDICTED: uncharacterized protein LOC105630268 [Jatropha curcas]
8 Hb_003861_080 0.0812537699 - - PREDICTED: DNA polymerase kappa isoform X2 [Jatropha curcas]
9 Hb_000614_230 0.0828156654 - - PREDICTED: F-box protein SKIP14 [Jatropha curcas]
10 Hb_004046_010 0.0831288236 - - PREDICTED: uncharacterized protein LOC105632478 isoform X2 [Jatropha curcas]
11 Hb_000179_210 0.0851085426 - - PREDICTED: uncharacterized protein LOC105637927 [Jatropha curcas]
12 Hb_000754_060 0.086745509 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 69 isoform X1 [Jatropha curcas]
13 Hb_000186_240 0.0868095801 - - PREDICTED: 39S ribosomal protein L4, mitochondrial [Jatropha curcas]
14 Hb_000069_460 0.0877507593 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 31-like [Jatropha curcas]
15 Hb_000029_030 0.0885525957 - - PREDICTED: mitochondrial fission protein ELM1 [Jatropha curcas]
16 Hb_002006_090 0.0890751304 - - PREDICTED: pentatricopeptide repeat-containing protein At5g50990 [Jatropha curcas]
17 Hb_001085_170 0.0892913492 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 2 isoform X1 [Jatropha curcas]
18 Hb_000190_140 0.0894718989 transcription factor TF Family: TRAF PREDICTED: ETO1-like protein 1 [Jatropha curcas]
19 Hb_005062_070 0.090184478 - - RNA splicing protein mrs2, mitochondrial, putative [Ricinus communis]
20 Hb_000200_340 0.092461258 - - PREDICTED: pentatricopeptide repeat-containing protein At5g66520-like [Jatropha curcas]

Gene co-expression network

sample Hb_000110_160 Hb_000110_160 Hb_001329_300 Hb_001329_300 Hb_000110_160--Hb_001329_300 Hb_008066_010 Hb_008066_010 Hb_000110_160--Hb_008066_010 Hb_011918_080 Hb_011918_080 Hb_000110_160--Hb_011918_080 Hb_001051_100 Hb_001051_100 Hb_000110_160--Hb_001051_100 Hb_000567_260 Hb_000567_260 Hb_000110_160--Hb_000567_260 Hb_178968_110 Hb_178968_110 Hb_000110_160--Hb_178968_110 Hb_001329_300--Hb_000567_260 Hb_002006_090 Hb_002006_090 Hb_001329_300--Hb_002006_090 Hb_000614_230 Hb_000614_230 Hb_001329_300--Hb_000614_230 Hb_001329_300--Hb_008066_010 Hb_008695_210 Hb_008695_210 Hb_001329_300--Hb_008695_210 Hb_000069_460 Hb_000069_460 Hb_008066_010--Hb_000069_460 Hb_010710_030 Hb_010710_030 Hb_008066_010--Hb_010710_030 Hb_000221_270 Hb_000221_270 Hb_008066_010--Hb_000221_270 Hb_008066_010--Hb_000567_260 Hb_007558_140 Hb_007558_140 Hb_011918_080--Hb_007558_140 Hb_002477_160 Hb_002477_160 Hb_011918_080--Hb_002477_160 Hb_015306_020 Hb_015306_020 Hb_011918_080--Hb_015306_020 Hb_004046_010 Hb_004046_010 Hb_011918_080--Hb_004046_010 Hb_011918_080--Hb_001329_300 Hb_000436_070 Hb_000436_070 Hb_001051_100--Hb_000436_070 Hb_001248_130 Hb_001248_130 Hb_001051_100--Hb_001248_130 Hb_001051_100--Hb_001329_300 Hb_000001_140 Hb_000001_140 Hb_001051_100--Hb_000001_140 Hb_001051_100--Hb_002006_090 Hb_001671_020 Hb_001671_020 Hb_000567_260--Hb_001671_020 Hb_000567_260--Hb_000614_230 Hb_189003_080 Hb_189003_080 Hb_000567_260--Hb_189003_080 Hb_000567_260--Hb_001248_130 Hb_055062_030 Hb_055062_030 Hb_000567_260--Hb_055062_030 Hb_003266_130 Hb_003266_130 Hb_178968_110--Hb_003266_130 Hb_005532_060 Hb_005532_060 Hb_178968_110--Hb_005532_060 Hb_000457_150 Hb_000457_150 Hb_178968_110--Hb_000457_150 Hb_000179_210 Hb_000179_210 Hb_178968_110--Hb_000179_210 Hb_178968_110--Hb_000614_230 Hb_010172_050 Hb_010172_050 Hb_178968_110--Hb_010172_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
152.039 44.7456 25.3224 34.8475 115.38 149.01
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
144.792 113.674 248.79 60.0997 30.2783

CAGE analysis